We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFIC
(GeneCards)
ModelNFIC_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusbbTTGGCWb
Best auROC (human)0.932
Best auROC (mouse)0.831
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)1
Aligned words500
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1C (NF-IC) {7.1.2.0.3}
HGNCHGNC:7786
EntrezGeneGeneID:4782
(SSTAR profile)
UniProt IDNFIC_HUMAN
UniProt ACP08651
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.89601
0.0005 6.81433
0.0001 7.874454999999999
GTEx tissue expression atlas NFIC expression
ReMap ChIP-seq dataset list NFIC datasets
Motifs in JASPAR
PCM
ACGT
0182.096.083.0239.0
0216.0253.079.0152.0
030.0187.01.0312.0
040.00.016.0484.0
050.00.0497.03.0
061.01.0495.03.0
0716.0480.04.00.0
08299.045.02.0154.0
0977.0139.0195.089.0
PWM
ACGT
01-0.415-0.26-0.4030.642
02-1.9750.699-0.4520.193
03-4.40.399-3.9030.907
04-4.4-4.4-1.9751.345
05-4.4-4.41.371-3.325
06-3.903-3.9031.367-3.325
07-1.9751.336-3.126-4.4
080.865-1.0-3.5730.206
09-0.4770.1050.44-0.335