Model info
| Transcription factor | NFIC (GeneCards) | ||||||||
| Model | NFIC_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bbTTGGCWb | ||||||||
| Best auROC (human) | 0.932 | ||||||||
| Best auROC (mouse) | 0.831 | ||||||||
| Peak sets in benchmark (human) | 18 | ||||||||
| Peak sets in benchmark (mouse) | 1 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Nuclear factor 1 {7.1.2} | ||||||||
| TF subfamily | NF-1C (NF-IC) {7.1.2.0.3} | ||||||||
| HGNC | HGNC:7786 | ||||||||
| EntrezGene | GeneID:4782 (SSTAR profile) | ||||||||
| UniProt ID | NFIC_HUMAN | ||||||||
| UniProt AC | P08651 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NFIC expression | ||||||||
| ReMap ChIP-seq dataset list | NFIC datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 82.0 | 96.0 | 83.0 | 239.0 |
| 02 | 16.0 | 253.0 | 79.0 | 152.0 |
| 03 | 0.0 | 187.0 | 1.0 | 312.0 |
| 04 | 0.0 | 0.0 | 16.0 | 484.0 |
| 05 | 0.0 | 0.0 | 497.0 | 3.0 |
| 06 | 1.0 | 1.0 | 495.0 | 3.0 |
| 07 | 16.0 | 480.0 | 4.0 | 0.0 |
| 08 | 299.0 | 45.0 | 2.0 | 154.0 |
| 09 | 77.0 | 139.0 | 195.0 | 89.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.415 | -0.26 | -0.403 | 0.642 |
| 02 | -1.975 | 0.699 | -0.452 | 0.193 |
| 03 | -4.4 | 0.399 | -3.903 | 0.907 |
| 04 | -4.4 | -4.4 | -1.975 | 1.345 |
| 05 | -4.4 | -4.4 | 1.371 | -3.325 |
| 06 | -3.903 | -3.903 | 1.367 | -3.325 |
| 07 | -1.975 | 1.336 | -3.126 | -4.4 |
| 08 | 0.865 | -1.0 | -3.573 | 0.206 |
| 09 | -0.477 | 0.105 | 0.44 | -0.335 |