We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNfic
ModelNFIC_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusnbYTGGCWbnndbYYhd
Best auROC (human)0.976
Best auROC (mouse)0.879
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)1
Aligned words295
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1C {7.1.2.0.3}
MGIMGI:109591
EntrezGeneGeneID:18029
(SSTAR profile)
UniProt IDNFIC_MOUSE
UniProt ACP70255
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.91406
0.0005 12.52206
0.0001 15.54786
GTEx tissue expression atlas Nfic expression
Motifs in JASPAR
MA0119.1 (NFIC::TLX1; Homo sapiens)
MA0161.1 (NFIC; Homo sapiens)
MA0161.2 (NFIC; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.026.019.042.02.016.05.023.05.024.04.013.07.049.022.034.0
020.08.01.09.00.032.00.083.00.028.01.021.02.028.010.072.0
030.00.00.02.05.00.03.088.01.00.01.010.02.00.025.0158.0
040.00.08.00.00.00.00.00.00.00.029.00.00.00.0257.01.0
050.00.00.00.00.00.00.00.00.00.0281.013.00.00.01.00.0
060.00.00.00.00.00.00.00.040.0242.00.00.01.012.00.00.0
0732.01.01.07.0141.017.07.089.00.00.00.00.00.00.00.00.0
0825.031.077.040.06.04.01.07.00.04.02.02.04.022.033.037.0
0912.06.012.05.024.015.01.021.034.028.028.023.015.016.029.026.0
1025.012.035.013.024.015.012.014.026.016.017.011.013.010.033.019.0
1129.08.042.09.022.09.05.017.040.09.037.011.017.03.017.020.0
1215.013.053.027.03.09.03.014.014.017.038.032.02.07.038.010.0
1316.011.03.04.09.018.02.017.07.094.011.020.06.048.04.025.0
147.012.07.012.017.0140.01.013.03.06.02.09.08.023.07.028.0
158.06.012.09.0124.037.03.017.03.06.05.03.018.07.019.018.0
1646.016.069.022.031.08.03.014.08.012.014.05.011.05.014.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.4620.3380.0290.813-2.077-0.139-1.2550.217-1.2550.259-1.462-0.342-0.9380.9660.1740.603
02-3.968-0.811-2.629-0.698-3.9680.543-3.9681.49-3.9680.411-2.6290.128-2.0770.411-0.5961.348
03-3.968-3.968-3.968-2.077-1.255-3.968-1.7231.548-2.629-3.968-2.629-0.596-2.077-3.9680.32.131
04-3.968-3.968-0.811-3.968-3.968-3.968-3.968-3.968-3.968-3.9680.446-3.968-3.968-3.9682.617-2.629
05-3.968-3.968-3.968-3.968-3.968-3.968-3.968-3.968-3.968-3.9682.706-0.342-3.968-3.968-2.629-3.968
06-3.968-3.968-3.968-3.968-3.968-3.968-3.968-3.9680.7642.557-3.968-3.968-2.629-0.419-3.968-3.968
070.543-2.629-2.629-0.9382.018-0.08-0.9381.559-3.968-3.968-3.968-3.968-3.968-3.968-3.968-3.968
080.30.5121.4150.764-1.084-1.462-2.629-0.938-3.968-1.462-2.077-2.077-1.4620.1740.5740.687
09-0.419-1.084-0.419-1.2550.259-0.202-2.6290.1280.6030.4110.4110.217-0.202-0.1390.4460.338
100.3-0.4190.632-0.3420.259-0.202-0.419-0.2690.338-0.139-0.08-0.504-0.342-0.5960.5740.029
110.446-0.8110.813-0.6980.174-0.698-1.255-0.080.764-0.6980.687-0.504-0.08-1.723-0.080.08
12-0.202-0.3421.0430.375-1.723-0.698-1.723-0.269-0.269-0.080.7130.543-2.077-0.9380.713-0.596
13-0.139-0.504-1.723-1.462-0.698-0.024-2.077-0.08-0.9381.614-0.5040.08-1.0840.945-1.4620.3
14-0.938-0.419-0.938-0.419-0.082.011-2.629-0.342-1.723-1.084-2.077-0.698-0.8110.217-0.9380.411
15-0.811-1.084-0.419-0.6981.890.687-1.723-0.08-1.723-1.084-1.255-1.723-0.024-0.9380.029-0.024
160.903-0.1391.3060.1740.512-0.811-1.723-0.269-0.811-0.419-0.269-1.255-0.504-1.255-0.269-0.08