NFIL3_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

NFIL3
(GeneCards)

Model

NFIL3_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

11

Quality

D

Motif rank

0

Consensus

dvTTATGYAAb

Best auROC (human)

0.543

Best auROC (mouse)

0.869

Peak sets in benchmark (human)

2

Peak sets in benchmark (mouse)

2

Aligned words

501

TF family

C/EBP-related {1.1.8}

TF subfamily

PAR factors {1.1.8.2}

HGNC

EntrezGene

GeneID:4783
(SSTAR profile)

UniProt ID

UniProt AC

Q16649
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.07381
0.0005	6.00838
0.0001	7.87937

GTEx tissue expression atlas

NFIL3 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0025.1 (NFIL3; Homo sapiens)

PCM

	A	C	G	T
01	167.0	46.0	153.0	134.0
02	198.0	66.0	214.0	22.0
03	0.0	5.0	1.0	494.0
04	2.0	5.0	134.0	359.0
05	411.0	6.0	38.0	45.0
06	23.0	35.0	34.0	408.0
07	12.0	11.0	475.0	2.0
08	40.0	165.0	4.0	291.0
09	437.0	57.0	4.0	2.0
10	497.0	1.0	1.0	1.0
11	19.0	186.0	99.0	196.0

PWM

	A	C	G	T
01	0.287	-0.979	0.2	0.069
02	0.455	-0.628	0.533	-1.681
03	-4.4	-2.961	-3.903	1.365
04	-3.573	-2.961	0.069	1.047
05	1.182	-2.819	-1.163	-1.0
06	-1.64	-1.242	-1.27	1.174
07	-2.234	-2.311	1.326	-3.573
08	-1.114	0.275	-3.126	0.838
09	1.243	-0.771	-3.126	-3.573
10	1.371	-3.903	-3.903	-3.903
11	-1.818	0.393	-0.23	0.445