Model info
| Transcription factor | Nfil3 | ||||||||
| Model | NFIL3_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvTTATGYAAb | ||||||||
| Best auROC (human) | 0.543 | ||||||||
| Best auROC (mouse) | 0.869 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | C/EBP-related {1.1.8} | ||||||||
| TF subfamily | PAR factors {1.1.8.2} | ||||||||
| MGI | MGI:109495 | ||||||||
| EntrezGene | GeneID:18030 (SSTAR profile) | ||||||||
| UniProt ID | NFIL3_MOUSE | ||||||||
| UniProt AC | O08750 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfil3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 167.0 | 46.0 | 153.0 | 134.0 |
| 02 | 198.0 | 66.0 | 214.0 | 22.0 |
| 03 | 0.0 | 5.0 | 1.0 | 494.0 |
| 04 | 2.0 | 5.0 | 134.0 | 359.0 |
| 05 | 411.0 | 6.0 | 38.0 | 45.0 |
| 06 | 23.0 | 35.0 | 34.0 | 408.0 |
| 07 | 12.0 | 11.0 | 475.0 | 2.0 |
| 08 | 40.0 | 165.0 | 4.0 | 291.0 |
| 09 | 437.0 | 57.0 | 4.0 | 2.0 |
| 10 | 497.0 | 1.0 | 1.0 | 1.0 |
| 11 | 19.0 | 186.0 | 99.0 | 196.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.287 | -0.979 | 0.2 | 0.069 |
| 02 | 0.455 | -0.628 | 0.533 | -1.681 |
| 03 | -4.4 | -2.961 | -3.903 | 1.365 |
| 04 | -3.573 | -2.961 | 0.069 | 1.047 |
| 05 | 1.182 | -2.819 | -1.163 | -1.0 |
| 06 | -1.64 | -1.242 | -1.27 | 1.174 |
| 07 | -2.234 | -2.311 | 1.326 | -3.573 |
| 08 | -1.114 | 0.275 | -3.126 | 0.838 |
| 09 | 1.243 | -0.771 | -3.126 | -3.573 |
| 10 | 1.371 | -3.903 | -3.903 | -3.903 |
| 11 | -1.818 | 0.393 | -0.23 | 0.445 |