We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFKB1
(GeneCards)
ModelNFKB1_HUMAN.H11DI.1.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
B
Motif rank
1
ConsensusndGGGRAAbhCCCh
Best auROC (human)0.787
Best auROC (mouse)0.965
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)16
Aligned words528
TF familyNF-kappaB-related factors {6.1.1}
TF subfamilyNF-kappaB p50 subunit-like factors {6.1.1.1}
HGNCHGNC:7794
EntrezGeneGeneID:4790
(SSTAR profile)
UniProt IDNFKB1_HUMAN
UniProt ACP19838
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.670960000000001
0.0005 9.865860000000001
0.0001 14.540965
GTEx tissue expression atlas NFKB1 expression
ReMap ChIP-seq dataset list NFKB1 datasets
Motifs in JASPAR
MA0105.1 (NFKB1; Mus musculus/Rattus norvegicus/Homo sapiens/Oryctolagus cuniculus)
MA0105.2 (NFKB1; Homo sapiens)
MA0105.3 (NFKB1; Homo sapiens)
MA0105.4 (NFKB1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0173.07.031.052.064.013.012.043.046.08.017.026.037.012.042.017.0
027.01.0211.01.05.02.028.05.02.00.099.01.03.03.0129.03.0
031.00.016.00.03.00.03.00.026.02.0438.01.01.01.08.00.0
041.00.029.01.00.00.02.01.04.01.0455.05.00.00.01.00.0
054.00.01.00.01.00.00.00.0343.03.0130.011.06.00.01.00.0
06300.015.033.06.02.00.01.00.0119.06.07.00.01.01.00.09.0
07396.01.025.00.022.00.00.00.040.01.00.00.015.00.00.00.0
0864.069.0139.0201.00.00.02.00.00.01.00.024.00.00.00.00.0
0920.022.03.019.03.029.00.038.022.044.010.065.019.080.09.0117.0
107.046.010.01.015.0158.02.00.01.016.05.00.013.0221.04.01.0
110.034.01.01.024.0409.03.05.09.02.00.010.00.01.00.01.0
122.021.08.02.027.0404.06.09.01.00.03.00.01.05.03.08.0
1312.07.011.01.0143.091.043.0153.07.05.06.02.011.00.03.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.841-1.454-0.0080.5040.711-0.86-0.9380.3160.383-1.328-0.599-0.1810.167-0.9380.293-0.599
02-1.454-3.1261.899-3.126-1.77-2.584-0.108-1.77-2.584-4.41.145-3.126-2.234-2.2341.408-2.234
03-3.126-4.4-0.658-4.4-2.234-4.4-2.234-4.4-0.181-2.5842.629-3.126-3.126-3.126-1.328-4.4
04-3.126-4.4-0.074-3.126-4.4-4.4-2.584-3.126-1.975-3.1262.667-1.77-4.4-4.4-3.126-4.4
05-1.975-4.4-3.126-4.4-3.126-4.4-4.4-4.42.384-2.2341.416-1.022-1.6-4.4-3.126-4.4
062.251-0.7210.054-1.6-2.584-4.4-3.126-4.41.328-1.6-1.454-4.4-3.126-3.126-4.4-1.215
072.528-3.126-0.22-4.4-0.346-4.4-4.4-4.40.244-3.126-4.4-4.4-0.721-4.4-4.4-4.4
080.7110.7851.4831.851-4.4-4.4-2.584-4.4-4.4-3.126-4.4-0.26-4.4-4.4-4.4-4.4
09-0.439-0.346-2.234-0.49-2.234-0.074-4.40.193-0.3460.339-1.1140.726-0.490.932-1.2151.311
10-1.4540.383-1.114-3.126-0.7211.611-2.584-4.4-3.126-0.658-1.77-4.4-0.861.946-1.975-3.126
11-4.40.083-3.126-3.126-0.262.56-2.234-1.77-1.215-2.584-4.4-1.114-4.4-3.126-4.4-3.126
12-2.584-0.392-1.328-2.584-0.1442.548-1.6-1.215-3.126-4.4-2.234-4.4-3.126-1.77-2.234-1.328
13-0.938-1.454-1.022-3.1261.5111.0610.3161.579-1.454-1.77-1.6-2.584-1.022-4.4-2.234-1.77