Model info
| Transcription factor | Nfkb1 | ||||||||
| Model | NFKB1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | GGGAAAbYCCC | ||||||||
| Best auROC (human) | 0.726 | ||||||||
| Best auROC (mouse) | 0.953 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 16 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | NF-kappaB-related factors {6.1.1} | ||||||||
| TF subfamily | NF-kappaB p50 subunit-like factors {6.1.1.1} | ||||||||
| MGI | MGI:97312 | ||||||||
| EntrezGene | GeneID:18033 (SSTAR profile) | ||||||||
| UniProt ID | NFKB1_MOUSE | ||||||||
| UniProt AC | P25799 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfkb1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 25.0 | 4.0 | 448.0 | 20.0 |
| 02 | 34.0 | 4.0 | 455.0 | 4.0 |
| 03 | 7.0 | 3.0 | 478.0 | 9.0 |
| 04 | 353.0 | 5.0 | 136.0 | 3.0 |
| 05 | 427.0 | 24.0 | 44.0 | 2.0 |
| 06 | 468.0 | 1.0 | 28.0 | 0.0 |
| 07 | 68.0 | 76.0 | 130.0 | 223.0 |
| 08 | 53.0 | 173.0 | 21.0 | 250.0 |
| 09 | 31.0 | 454.0 | 8.0 | 4.0 |
| 10 | 31.0 | 458.0 | 1.0 | 7.0 |
| 11 | 29.0 | 435.0 | 16.0 | 17.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.556 | -3.121 | 1.274 | -1.764 |
| 02 | -1.264 | -3.121 | 1.289 | -3.121 |
| 03 | -2.689 | -3.319 | 1.338 | -2.478 |
| 04 | 1.036 | -2.955 | 0.089 | -3.319 |
| 05 | 1.226 | -1.594 | -1.016 | -3.567 |
| 06 | 1.317 | -3.898 | -1.449 | -4.395 |
| 07 | -0.593 | -0.484 | 0.045 | 0.579 |
| 08 | -0.836 | 0.328 | -1.719 | 0.693 |
| 09 | -1.352 | 1.287 | -2.578 | -3.121 |
| 10 | -1.352 | 1.296 | -3.898 | -2.689 |
| 11 | -1.415 | 1.244 | -1.97 | -1.914 |