Transcription factor | NFKB2 (GeneCards) | ||||||||
Model | NFKB2_HUMAN.H11DI.0.B | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | nKGGRAAdYCCCdn | ||||||||
Best auROC (human) | 0.986 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 4 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 511 | ||||||||
TF family | NF-kappaB-related factors {6.1.1} | ||||||||
TF subfamily | NF-kappaB p50 subunit-like factors {6.1.1.1} | ||||||||
HGNC | HGNC:7795 | ||||||||
EntrezGene | GeneID:4791 (SSTAR profile) | ||||||||
UniProt ID | NFKB2_HUMAN | ||||||||
UniProt AC | Q00653 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | NFKB2 expression | ||||||||
ReMap ChIP-seq dataset list | NFKB2 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 6.0 | 2.0 | 132.0 | 20.0 | 22.0 | 4.0 | 35.0 | 37.0 | 6.0 | 7.0 | 101.0 | 14.0 | 4.0 | 11.0 | 86.0 | 13.0 |
02 | 8.0 | 0.0 | 30.0 | 0.0 | 8.0 | 1.0 | 14.0 | 1.0 | 14.0 | 0.0 | 337.0 | 3.0 | 14.0 | 1.0 | 68.0 | 1.0 |
03 | 16.0 | 1.0 | 27.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 12.0 | 1.0 | 423.0 | 13.0 | 0.0 | 0.0 | 5.0 | 0.0 |
04 | 25.0 | 0.0 | 1.0 | 2.0 | 2.0 | 0.0 | 0.0 | 0.0 | 287.0 | 5.0 | 157.0 | 8.0 | 8.0 | 0.0 | 4.0 | 1.0 |
05 | 275.0 | 25.0 | 21.0 | 1.0 | 4.0 | 1.0 | 0.0 | 0.0 | 140.0 | 5.0 | 17.0 | 0.0 | 11.0 | 0.0 | 0.0 | 0.0 |
06 | 404.0 | 14.0 | 5.0 | 7.0 | 29.0 | 1.0 | 1.0 | 0.0 | 38.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 78.0 | 54.0 | 206.0 | 134.0 | 2.0 | 2.0 | 3.0 | 8.0 | 0.0 | 0.0 | 4.0 | 2.0 | 0.0 | 0.0 | 7.0 | 0.0 |
08 | 17.0 | 44.0 | 0.0 | 19.0 | 2.0 | 31.0 | 0.0 | 23.0 | 13.0 | 117.0 | 9.0 | 81.0 | 7.0 | 80.0 | 0.0 | 57.0 |
09 | 9.0 | 30.0 | 0.0 | 0.0 | 44.0 | 227.0 | 0.0 | 1.0 | 2.0 | 7.0 | 0.0 | 0.0 | 10.0 | 166.0 | 3.0 | 1.0 |
10 | 3.0 | 59.0 | 1.0 | 2.0 | 0.0 | 426.0 | 0.0 | 4.0 | 0.0 | 2.0 | 0.0 | 1.0 | 0.0 | 1.0 | 1.0 | 0.0 |
11 | 0.0 | 3.0 | 0.0 | 0.0 | 58.0 | 390.0 | 12.0 | 28.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 1.0 | 2.0 |
12 | 15.0 | 8.0 | 26.0 | 11.0 | 111.0 | 71.0 | 45.0 | 170.0 | 1.0 | 1.0 | 8.0 | 3.0 | 2.0 | 1.0 | 16.0 | 11.0 |
13 | 31.0 | 21.0 | 51.0 | 26.0 | 31.0 | 8.0 | 12.0 | 30.0 | 18.0 | 20.0 | 48.0 | 9.0 | 36.0 | 38.0 | 67.0 | 54.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -1.6 | -2.584 | 1.431 | -0.439 | -0.346 | -1.975 | 0.112 | 0.167 | -1.6 | -1.454 | 1.165 | -0.788 | -1.975 | -1.022 | 1.004 | -0.86 |
02 | -1.328 | -4.4 | -0.04 | -4.4 | -1.328 | -3.126 | -0.788 | -3.126 | -0.788 | -4.4 | 2.367 | -2.234 | -0.788 | -3.126 | 0.771 | -3.126 |
03 | -0.658 | -3.126 | -0.144 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -0.938 | -3.126 | 2.594 | -0.86 | -4.4 | -4.4 | -1.77 | -4.4 |
04 | -0.22 | -4.4 | -3.126 | -2.584 | -2.584 | -4.4 | -4.4 | -4.4 | 2.206 | -1.77 | 1.604 | -1.328 | -1.328 | -4.4 | -1.975 | -3.126 |
05 | 2.164 | -0.22 | -0.392 | -3.126 | -1.975 | -3.126 | -4.4 | -4.4 | 1.49 | -1.77 | -0.599 | -4.4 | -1.022 | -4.4 | -4.4 | -4.4 |
06 | 2.548 | -0.788 | -1.77 | -1.454 | -0.074 | -3.126 | -3.126 | -4.4 | 0.193 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 |
07 | 0.907 | 0.542 | 1.875 | 1.446 | -2.584 | -2.584 | -2.234 | -1.328 | -4.4 | -4.4 | -1.975 | -2.584 | -4.4 | -4.4 | -1.454 | -4.4 |
08 | -0.599 | 0.339 | -4.4 | -0.49 | -2.584 | -0.008 | -4.4 | -0.302 | -0.86 | 1.311 | -1.215 | 0.945 | -1.454 | 0.932 | -4.4 | 0.595 |
09 | -1.215 | -0.04 | -4.4 | -4.4 | 0.339 | 1.972 | -4.4 | -3.126 | -2.584 | -1.454 | -4.4 | -4.4 | -1.114 | 1.66 | -2.234 | -3.126 |
10 | -2.234 | 0.63 | -3.126 | -2.584 | -4.4 | 2.601 | -4.4 | -1.975 | -4.4 | -2.584 | -4.4 | -3.126 | -4.4 | -3.126 | -3.126 | -4.4 |
11 | -4.4 | -2.234 | -4.4 | -4.4 | 0.613 | 2.513 | -0.938 | -0.108 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 | -1.975 | -3.126 | -2.584 |
12 | -0.721 | -1.328 | -0.181 | -1.022 | 1.259 | 0.814 | 0.361 | 1.684 | -3.126 | -3.126 | -1.328 | -2.234 | -2.584 | -3.126 | -0.658 | -1.022 |
13 | -0.008 | -0.392 | 0.485 | -0.181 | -0.008 | -1.328 | -0.938 | -0.04 | -0.543 | -0.439 | 0.425 | -1.215 | 0.14 | 0.193 | 0.756 | 0.542 |