We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFKB2
(GeneCards)
ModelNFKB2_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
B
Motif rank
0
ConsensusnKGGRAAdYCCCdn
Best auROC (human)0.986
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words511
TF familyNF-kappaB-related factors {6.1.1}
TF subfamilyNF-kappaB p50 subunit-like factors {6.1.1.1}
HGNCHGNC:7795
EntrezGeneGeneID:4791
(SSTAR profile)
UniProt IDNFKB2_HUMAN
UniProt ACQ00653
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.743760000000002
0.0005 10.833215
0.0001 15.129325000000001
GTEx tissue expression atlas NFKB2 expression
ReMap ChIP-seq dataset list NFKB2 datasets
Motifs in JASPAR
MA0778.1 (NFKB2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.02.0132.020.022.04.035.037.06.07.0101.014.04.011.086.013.0
028.00.030.00.08.01.014.01.014.00.0337.03.014.01.068.01.0
0316.01.027.00.00.00.02.00.012.01.0423.013.00.00.05.00.0
0425.00.01.02.02.00.00.00.0287.05.0157.08.08.00.04.01.0
05275.025.021.01.04.01.00.00.0140.05.017.00.011.00.00.00.0
06404.014.05.07.029.01.01.00.038.00.00.00.01.00.00.00.0
0778.054.0206.0134.02.02.03.08.00.00.04.02.00.00.07.00.0
0817.044.00.019.02.031.00.023.013.0117.09.081.07.080.00.057.0
099.030.00.00.044.0227.00.01.02.07.00.00.010.0166.03.01.0
103.059.01.02.00.0426.00.04.00.02.00.01.00.01.01.00.0
110.03.00.00.058.0390.012.028.02.00.00.00.00.04.01.02.0
1215.08.026.011.0111.071.045.0170.01.01.08.03.02.01.016.011.0
1331.021.051.026.031.08.012.030.018.020.048.09.036.038.067.054.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.6-2.5841.431-0.439-0.346-1.9750.1120.167-1.6-1.4541.165-0.788-1.975-1.0221.004-0.86
02-1.328-4.4-0.04-4.4-1.328-3.126-0.788-3.126-0.788-4.42.367-2.234-0.788-3.1260.771-3.126
03-0.658-3.126-0.144-4.4-4.4-4.4-2.584-4.4-0.938-3.1262.594-0.86-4.4-4.4-1.77-4.4
04-0.22-4.4-3.126-2.584-2.584-4.4-4.4-4.42.206-1.771.604-1.328-1.328-4.4-1.975-3.126
052.164-0.22-0.392-3.126-1.975-3.126-4.4-4.41.49-1.77-0.599-4.4-1.022-4.4-4.4-4.4
062.548-0.788-1.77-1.454-0.074-3.126-3.126-4.40.193-4.4-4.4-4.4-3.126-4.4-4.4-4.4
070.9070.5421.8751.446-2.584-2.584-2.234-1.328-4.4-4.4-1.975-2.584-4.4-4.4-1.454-4.4
08-0.5990.339-4.4-0.49-2.584-0.008-4.4-0.302-0.861.311-1.2150.945-1.4540.932-4.40.595
09-1.215-0.04-4.4-4.40.3391.972-4.4-3.126-2.584-1.454-4.4-4.4-1.1141.66-2.234-3.126
10-2.2340.63-3.126-2.584-4.42.601-4.4-1.975-4.4-2.584-4.4-3.126-4.4-3.126-3.126-4.4
11-4.4-2.234-4.4-4.40.6132.513-0.938-0.108-2.584-4.4-4.4-4.4-4.4-1.975-3.126-2.584
12-0.721-1.328-0.181-1.0221.2590.8140.3611.684-3.126-3.126-1.328-2.234-2.584-3.126-0.658-1.022
13-0.008-0.3920.485-0.181-0.008-1.328-0.938-0.04-0.543-0.4390.425-1.2150.140.1930.7560.542