We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFYA
(GeneCards)
ModelNFYA_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnbbRRCCAATvRvMRn
Best auROC (human)0.984
Best auROC (mouse)0.961
Peak sets in benchmark (human)19
Peak sets in benchmark (mouse)14
Aligned words507
TF familyHeteromeric CCAAT-binding factors {4.2.1}
TF subfamilyNF-YA (CP1A, CBF-B) {4.2.1.0.1}
HGNCHGNC:7804
EntrezGeneGeneID:4800
(SSTAR profile)
UniProt IDNFYA_HUMAN
UniProt ACP23511
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.51986
0.0005 10.00881
0.0001 15.33616
GTEx tissue expression atlas NFYA expression
ReMap ChIP-seq dataset list NFYA datasets
Motifs in JASPAR
MA0060.1 (NFYA; Mus musculus/Rattus norvegicus/Xenopus laevis/Xenopus (Silurana) tropicalis/Gallus gallus/Homo sapiens/Bos taurus/Oryctolagus cuniculus)
MA0060.2 (NFYA; Homo sapiens)
MA0060.3 (NFYA; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0116.053.045.043.011.026.018.058.023.037.027.036.010.042.015.040.0
026.031.012.011.018.036.016.088.08.045.014.038.025.080.021.051.0
0319.01.036.01.0141.017.026.08.032.04.027.00.066.020.094.08.0
0470.00.0169.019.023.00.015.04.081.02.058.042.07.00.06.04.0
051.0179.00.01.00.02.00.00.01.0246.00.01.00.069.00.00.0
060.02.00.00.03.0490.01.02.00.00.00.00.00.01.00.01.0
073.00.00.00.0493.00.00.00.01.00.00.00.03.00.00.00.0
08492.01.07.00.00.00.00.00.00.00.00.00.00.00.00.00.0
093.09.02.0478.00.00.00.01.00.01.01.05.00.00.00.00.0
100.00.02.01.01.08.00.01.00.00.02.01.094.0263.0111.016.0
1130.01.064.00.0210.021.036.04.075.01.039.00.013.02.04.00.0
1263.058.0193.014.05.06.09.05.034.023.075.011.03.00.01.00.0
1356.024.019.06.048.019.08.012.0172.061.030.015.015.08.05.02.0
14145.012.0111.023.039.01.055.017.034.04.010.014.09.00.021.05.0
1545.055.096.031.06.04.03.04.044.072.052.029.012.08.020.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.6580.5230.3610.316-1.022-0.181-0.5430.613-0.3020.167-0.1440.14-1.1140.293-0.7210.244
02-1.6-0.008-0.938-1.022-0.5430.14-0.6581.027-1.3280.361-0.7880.193-0.220.932-0.3920.485
03-0.49-3.1260.14-3.1261.497-0.599-0.181-1.3280.023-1.975-0.144-4.40.741-0.4391.093-1.328
040.8-4.41.678-0.49-0.302-4.4-0.721-1.9750.945-2.5840.6130.293-1.454-4.4-1.6-1.975
05-3.1261.735-4.4-3.126-4.4-2.584-4.4-4.4-3.1262.053-4.4-3.126-4.40.785-4.4-4.4
06-4.4-2.584-4.4-4.4-2.2342.741-3.126-2.584-4.4-4.4-4.4-4.4-4.4-3.126-4.4-3.126
07-2.234-4.4-4.4-4.42.747-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.234-4.4-4.4-4.4
082.745-3.126-1.454-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
09-2.234-1.215-2.5842.716-4.4-4.4-4.4-3.126-4.4-3.126-3.126-1.77-4.4-4.4-4.4-4.4
10-4.4-4.4-2.584-3.126-3.126-1.328-4.4-3.126-4.4-4.4-2.584-3.1261.0932.1191.259-0.658
11-0.04-3.1260.711-4.41.895-0.3920.14-1.9750.868-3.1260.219-4.4-0.86-2.584-1.975-4.4
120.6950.6131.81-0.788-1.77-1.6-1.215-1.770.083-0.3020.868-1.022-2.234-4.4-3.126-4.4
130.578-0.26-0.49-1.60.425-0.49-1.328-0.9381.6950.663-0.04-0.721-0.721-1.328-1.77-2.584
141.525-0.9381.259-0.3020.219-3.1260.56-0.5990.083-1.975-1.114-0.788-1.215-4.4-0.392-1.77
150.3610.561.114-0.008-1.6-1.975-2.234-1.9750.3390.8280.504-0.074-0.938-1.328-0.439-0.49