We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFYA
(GeneCards)
ModelNFYA_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusbbRRCCAATSRvMR
Best auROC (human)0.982
Best auROC (mouse)0.96
Peak sets in benchmark (human)19
Peak sets in benchmark (mouse)14
Aligned words500
TF familyHeteromeric CCAAT-binding factors {4.2.1}
TF subfamilyNF-YA (CP1A, CBF-B) {4.2.1.0.1}
HGNCHGNC:7804
EntrezGeneGeneID:4800
(SSTAR profile)
UniProt IDNFYA_HUMAN
UniProt ACP23511
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.24681
0.0005 5.38936
0.0001 7.7835149999999995
GTEx tissue expression atlas NFYA expression
ReMap ChIP-seq dataset list NFYA datasets
Motifs in JASPAR
PCM
ACGT
0161.0162.0105.0172.0
0245.0205.061.0189.0
03252.050.0176.022.0
04188.07.0245.060.0
053.0495.00.02.0
062.0493.01.04.0
07500.00.00.00.0
08484.06.09.01.0
092.010.02.0486.0
1072.0277.0129.022.0
11337.026.0131.06.0
12117.089.0261.033.0
13290.0106.070.034.0
14230.015.0198.057.0
PWM
ACGT
01-0.7050.256-0.1720.316
02-1.00.49-0.7050.409
030.695-0.8980.339-1.681
040.404-2.6940.667-0.721
05-3.3251.367-4.4-3.573
06-3.5731.363-3.903-3.126
071.377-4.4-4.4-4.4
081.345-2.819-2.484-3.903
09-3.573-2.394-3.5731.349
10-0.5430.7890.031-1.681
110.984-1.5250.046-2.819
12-0.065-0.3350.73-1.298
130.835-0.163-0.57-1.27
140.604-2.0340.455-0.771