Model info
| Transcription factor | Nfya | ||||||||
| Model | NFYA_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbRRCCAATSRvMR | ||||||||
| Best auROC (human) | 0.982 | ||||||||
| Best auROC (mouse) | 0.96 | ||||||||
| Peak sets in benchmark (human) | 19 | ||||||||
| Peak sets in benchmark (mouse) | 14 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Heteromeric CCAAT-binding factors {4.2.1} | ||||||||
| TF subfamily | NF-YA (CP1A, CBF-B) {4.2.1.0.1} | ||||||||
| MGI | MGI:97316 | ||||||||
| EntrezGene | GeneID:18044 (SSTAR profile) | ||||||||
| UniProt ID | NFYA_MOUSE | ||||||||
| UniProt AC | P23708 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfya expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 61.0 | 162.0 | 105.0 | 172.0 |
| 02 | 45.0 | 205.0 | 61.0 | 189.0 |
| 03 | 252.0 | 50.0 | 176.0 | 22.0 |
| 04 | 188.0 | 7.0 | 245.0 | 60.0 |
| 05 | 3.0 | 495.0 | 0.0 | 2.0 |
| 06 | 2.0 | 493.0 | 1.0 | 4.0 |
| 07 | 500.0 | 0.0 | 0.0 | 0.0 |
| 08 | 484.0 | 6.0 | 9.0 | 1.0 |
| 09 | 2.0 | 10.0 | 2.0 | 486.0 |
| 10 | 72.0 | 277.0 | 129.0 | 22.0 |
| 11 | 337.0 | 26.0 | 131.0 | 6.0 |
| 12 | 117.0 | 89.0 | 261.0 | 33.0 |
| 13 | 290.0 | 106.0 | 70.0 | 34.0 |
| 14 | 230.0 | 15.0 | 198.0 | 57.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.705 | 0.256 | -0.172 | 0.316 |
| 02 | -1.0 | 0.49 | -0.705 | 0.409 |
| 03 | 0.695 | -0.898 | 0.339 | -1.681 |
| 04 | 0.404 | -2.694 | 0.667 | -0.721 |
| 05 | -3.325 | 1.367 | -4.4 | -3.573 |
| 06 | -3.573 | 1.363 | -3.903 | -3.126 |
| 07 | 1.377 | -4.4 | -4.4 | -4.4 |
| 08 | 1.345 | -2.819 | -2.484 | -3.903 |
| 09 | -3.573 | -2.394 | -3.573 | 1.349 |
| 10 | -0.543 | 0.789 | 0.031 | -1.681 |
| 11 | 0.984 | -1.525 | 0.046 | -2.819 |
| 12 | -0.065 | -0.335 | 0.73 | -1.298 |
| 13 | 0.835 | -0.163 | -0.57 | -1.27 |
| 14 | 0.604 | -2.034 | 0.455 | -0.771 |