Model info
| Transcription factor | NFYC (GeneCards) | ||||||||
| Model | NFYC_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbvdCCAATvRvvd | ||||||||
| Best auROC (human) | 0.866 | ||||||||
| Best auROC (mouse) | 0.984 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 427 | ||||||||
| TF family | Heteromeric CCAAT-binding factors {4.2.1} | ||||||||
| TF subfamily | NF-YC {4.2.1.0.3} | ||||||||
| HGNC | HGNC:7806 | ||||||||
| EntrezGene | GeneID:4802 (SSTAR profile) | ||||||||
| UniProt ID | NFYC_HUMAN | ||||||||
| UniProt AC | Q13952 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NFYC expression | ||||||||
| ReMap ChIP-seq dataset list | NFYC datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 60.0 | 144.0 | 84.0 | 138.0 |
| 02 | 36.0 | 154.0 | 81.0 | 155.0 |
| 03 | 203.0 | 43.0 | 142.0 | 38.0 |
| 04 | 135.0 | 29.0 | 206.0 | 56.0 |
| 05 | 2.0 | 401.0 | 12.0 | 11.0 |
| 06 | 8.0 | 414.0 | 3.0 | 1.0 |
| 07 | 395.0 | 11.0 | 4.0 | 16.0 |
| 08 | 386.0 | 17.0 | 20.0 | 3.0 |
| 09 | 12.0 | 23.0 | 8.0 | 383.0 |
| 10 | 54.0 | 226.0 | 110.0 | 36.0 |
| 11 | 261.0 | 37.0 | 117.0 | 11.0 |
| 12 | 74.0 | 66.0 | 241.0 | 45.0 |
| 13 | 191.0 | 111.0 | 80.0 | 44.0 |
| 14 | 152.0 | 36.0 | 169.0 | 69.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.563 | 0.298 | -0.234 | 0.256 |
| 02 | -1.058 | 0.364 | -0.269 | 0.371 |
| 03 | 0.638 | -0.886 | 0.284 | -1.006 |
| 04 | 0.234 | -1.264 | 0.653 | -0.63 |
| 05 | -3.426 | 1.315 | -2.079 | -2.155 |
| 06 | -2.43 | 1.347 | -3.175 | -3.761 |
| 07 | 1.3 | -2.155 | -2.975 | -1.819 |
| 08 | 1.277 | -1.764 | -1.614 | -3.175 |
| 09 | -2.079 | -1.483 | -2.43 | 1.27 |
| 10 | -0.666 | 0.745 | 0.032 | -1.058 |
| 11 | 0.888 | -1.031 | 0.093 | -2.155 |
| 12 | -0.358 | -0.47 | 0.809 | -0.843 |
| 13 | 0.578 | 0.041 | -0.281 | -0.864 |
| 14 | 0.352 | -1.058 | 0.457 | -0.426 |