Model info
| Transcription factor | Nfyc | ||||||||
| Model | NFYC_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbRRCCAATSRRMR | ||||||||
| Best auROC (human) | 0.695 | ||||||||
| Best auROC (mouse) | 0.994 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Heteromeric CCAAT-binding factors {4.2.1} | ||||||||
| TF subfamily | NF-YC {4.2.1.0.3} | ||||||||
| MGI | MGI:107901 | ||||||||
| EntrezGene | GeneID:18046 (SSTAR profile) | ||||||||
| UniProt ID | NFYC_MOUSE | ||||||||
| UniProt AC | P70353 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfyc expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 66.0 | 167.0 | 99.0 | 168.0 |
| 02 | 54.0 | 213.0 | 64.0 | 169.0 |
| 03 | 303.0 | 48.0 | 135.0 | 14.0 |
| 04 | 159.0 | 19.0 | 271.0 | 51.0 |
| 05 | 0.0 | 496.0 | 1.0 | 3.0 |
| 06 | 1.0 | 498.0 | 0.0 | 1.0 |
| 07 | 491.0 | 0.0 | 0.0 | 9.0 |
| 08 | 495.0 | 1.0 | 3.0 | 1.0 |
| 09 | 0.0 | 2.0 | 0.0 | 498.0 |
| 10 | 48.0 | 309.0 | 118.0 | 25.0 |
| 11 | 368.0 | 16.0 | 113.0 | 3.0 |
| 12 | 94.0 | 70.0 | 299.0 | 37.0 |
| 13 | 297.0 | 89.0 | 87.0 | 27.0 |
| 14 | 214.0 | 18.0 | 212.0 | 56.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.628 | 0.287 | -0.23 | 0.293 |
| 02 | -0.823 | 0.528 | -0.658 | 0.298 |
| 03 | 0.878 | -0.938 | 0.076 | -2.096 |
| 04 | 0.238 | -1.818 | 0.767 | -0.879 |
| 05 | -4.4 | 1.369 | -3.903 | -3.325 |
| 06 | -3.903 | 1.373 | -4.4 | -3.903 |
| 07 | 1.359 | -4.4 | -4.4 | -2.484 |
| 08 | 1.367 | -3.903 | -3.325 | -3.903 |
| 09 | -4.4 | -3.573 | -4.4 | 1.373 |
| 10 | -0.938 | 0.898 | -0.057 | -1.561 |
| 11 | 1.072 | -1.975 | -0.1 | -3.325 |
| 12 | -0.281 | -0.57 | 0.865 | -1.189 |
| 13 | 0.858 | -0.335 | -0.357 | -1.489 |
| 14 | 0.533 | -1.868 | 0.523 | -0.788 |