We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNEUROG2
(GeneCards)
ModelNGN2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
0
ConsensusvbRRCAGATGKb
Best auROC (human)
Best auROC (mouse)0.977
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words206
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:13805
EntrezGeneGeneID:63973
(SSTAR profile)
UniProt IDNGN2_HUMAN
UniProt ACQ9H2A3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.19311
0.0005 5.240514999999999
0.0001 7.473025
GTEx tissue expression atlas NEUROG2 expression
ReMap ChIP-seq dataset list NEUROG2 datasets
Motifs in JASPAR
PCM
ACGT
0155.036.091.024.0
0224.053.082.047.0
03119.018.059.010.0
0489.027.090.00.0
051.0202.01.02.0
06206.00.00.00.0
070.00.0200.06.0
08159.046.01.00.0
092.00.01.0203.0
101.01.0197.07.0
118.021.0150.027.0
1215.084.045.062.0
PWM
ACGT
010.064-0.3470.558-0.735
02-0.7350.0280.456-0.089
030.823-1.0050.133-1.539
040.536-0.6230.547-3.68
05-3.121.348-3.12-2.764
061.367-3.68-3.68-3.68
07-3.68-3.681.338-1.975
081.11-0.11-3.12-3.68
09-2.764-3.68-3.121.353
10-3.12-3.121.323-1.847
11-1.734-0.8611.052-0.623
12-1.1740.479-0.1310.181