We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNeurog2
ModelNGN2_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusvvnRRCAGATGGb
Best auROC (human)
Best auROC (mouse)0.984
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words513
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
MGIMGI:109619
EntrezGeneGeneID:11924
(SSTAR profile)
UniProt IDNGN2_MOUSE
UniProt ACP70447
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.2580100000000005
0.0005 9.781960000000002
0.0001 15.181675
GTEx tissue expression atlas Neurog2 expression
Motifs in JASPAR
MA0669.1 (NEUROG2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0138.024.075.013.033.044.018.022.043.029.080.021.06.016.029.08.0
0219.025.050.026.031.016.018.048.039.045.068.050.07.011.038.08.0
0335.05.053.03.072.03.016.06.0102.013.051.08.031.08.091.02.0
04103.021.0116.00.022.02.05.00.089.037.084.01.05.09.05.00.0
051.0217.00.01.00.069.00.00.00.0210.00.00.00.01.00.00.0
061.00.00.00.0495.00.02.00.00.00.00.00.01.00.00.00.0
071.03.0452.041.00.00.00.00.00.01.01.00.00.00.00.00.0
081.00.00.00.04.00.00.00.0347.096.09.01.041.00.00.00.0
0913.04.00.0376.03.00.00.093.00.00.00.09.00.00.00.01.0
100.00.016.00.00.00.04.00.00.00.00.00.00.00.0472.07.0
110.00.00.00.00.00.00.00.00.027.0406.059.00.01.06.00.0
120.00.00.00.05.012.02.09.054.0158.091.0109.00.020.029.010.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.195-0.2580.87-0.8580.0560.341-0.541-0.3440.318-0.0720.934-0.39-1.598-0.656-0.072-1.326
02-0.488-0.2180.467-0.179-0.006-0.656-0.5410.4270.2210.3630.7730.467-1.452-1.020.195-1.326
030.114-1.7680.525-2.2320.83-2.232-0.656-1.5981.176-0.8580.487-1.326-0.006-1.3261.063-2.582
041.186-0.391.305-4.398-0.344-2.582-1.768-4.3981.0410.1690.983-3.124-1.768-1.213-1.768-4.398
05-3.1241.929-4.398-3.124-4.3980.787-4.398-4.398-4.3981.897-4.398-4.398-4.398-3.124-4.398-4.398
06-3.124-4.398-4.398-4.3982.753-4.398-2.582-4.398-4.398-4.398-4.398-4.398-3.124-4.398-4.398-4.398
07-3.124-2.2322.6620.271-4.398-4.398-4.398-4.398-4.398-3.124-3.124-4.398-4.398-4.398-4.398-4.398
08-3.124-4.398-4.398-4.398-1.973-4.398-4.398-4.3982.3981.116-1.213-3.1240.271-4.398-4.398-4.398
09-0.858-1.973-4.3982.478-2.232-4.398-4.3981.084-4.398-4.398-4.398-1.213-4.398-4.398-4.398-3.124
10-4.398-4.398-0.656-4.398-4.398-4.398-1.973-4.398-4.398-4.398-4.398-4.398-4.398-4.3982.705-1.452
11-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-0.1422.5550.632-4.398-3.124-1.598-4.398
12-4.398-4.398-4.398-4.398-1.768-0.936-2.582-1.2130.5441.6131.0631.243-4.398-0.437-0.072-1.112