Model info
| Transcription factor | Neurog2 | ||||||||
| Model | NGN2_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vbRRCAGATGKb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.977 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 206 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
| MGI | MGI:109619 | ||||||||
| EntrezGene | GeneID:11924 (SSTAR profile) | ||||||||
| UniProt ID | NGN2_MOUSE | ||||||||
| UniProt AC | P70447 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Neurog2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 55.0 | 36.0 | 91.0 | 24.0 |
| 02 | 24.0 | 53.0 | 82.0 | 47.0 |
| 03 | 119.0 | 18.0 | 59.0 | 10.0 |
| 04 | 89.0 | 27.0 | 90.0 | 0.0 |
| 05 | 1.0 | 202.0 | 1.0 | 2.0 |
| 06 | 206.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 200.0 | 6.0 |
| 08 | 159.0 | 46.0 | 1.0 | 0.0 |
| 09 | 2.0 | 0.0 | 1.0 | 203.0 |
| 10 | 1.0 | 1.0 | 197.0 | 7.0 |
| 11 | 8.0 | 21.0 | 150.0 | 27.0 |
| 12 | 15.0 | 84.0 | 45.0 | 62.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.064 | -0.347 | 0.558 | -0.735 |
| 02 | -0.735 | 0.028 | 0.456 | -0.089 |
| 03 | 0.823 | -1.005 | 0.133 | -1.539 |
| 04 | 0.536 | -0.623 | 0.547 | -3.68 |
| 05 | -3.12 | 1.348 | -3.12 | -2.764 |
| 06 | 1.367 | -3.68 | -3.68 | -3.68 |
| 07 | -3.68 | -3.68 | 1.338 | -1.975 |
| 08 | 1.11 | -0.11 | -3.12 | -3.68 |
| 09 | -2.764 | -3.68 | -3.12 | 1.353 |
| 10 | -3.12 | -3.12 | 1.323 | -1.847 |
| 11 | -1.734 | -0.861 | 1.052 | -0.623 |
| 12 | -1.174 | 0.479 | -0.131 | 0.181 |