We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX2-1
(GeneCards)
ModelNKX21_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusbWKGAGWGbh
Best auROC (human)0.92
Best auROC (mouse)0.917
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)9
Aligned words501
TF familyNK-related factors {3.1.2}
TF subfamilyNK-2.1 {3.1.2.14}
HGNCHGNC:11825
EntrezGeneGeneID:7080
(SSTAR profile)
UniProt IDNKX21_HUMAN
UniProt ACP43699
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.27846
0.0005 6.216044999999999
0.0001 7.83154
GTEx tissue expression atlas NKX2-1 expression
ReMap ChIP-seq dataset list NKX2-1 datasets
Motifs in JASPAR
PCM
ACGT
0133.0211.0113.0143.0
0266.046.012.0376.0
0338.011.0167.0284.0
0417.03.0479.01.0
05498.01.00.01.0
065.04.0491.00.0
07141.01.052.0306.0
0854.01.0439.06.0
0916.0163.0222.099.0
1079.0174.078.0169.0
PWM
ACGT
01-1.2980.519-0.10.133
02-0.628-0.979-2.2341.093
03-1.163-2.3110.2870.814
04-1.92-3.3251.334-3.903
051.373-3.903-4.4-3.903
06-2.961-3.1261.359-4.4
070.119-3.903-0.860.888
08-0.823-3.9031.247-2.819
09-1.9750.2630.569-0.23
10-0.4520.327-0.4640.298