We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx2-1
ModelNKX21_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnbWbRAGWGbbhn
Best auROC (human)0.905
Best auROC (mouse)0.937
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)9
Aligned words502
TF familyNK-related factors {3.1.2}
TF subfamilyNK-2.1 {3.1.2.14}
MGIMGI:108067
EntrezGeneGeneID:21869
(SSTAR profile)
UniProt IDNKX21_MOUSE
UniProt ACP50220
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.19716
0.0005 12.652515000000001
0.0001 15.311074999999999
GTEx tissue expression atlas Nkx2-1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0114.038.027.021.027.051.016.033.05.043.031.031.05.059.036.043.0
026.012.012.021.032.014.02.0143.014.017.02.077.012.010.06.0100.0
037.06.013.038.06.02.02.043.02.00.02.018.033.054.0114.0140.0
048.06.034.00.031.012.019.00.036.06.088.01.023.08.0208.00.0
0598.00.00.00.032.00.00.00.0343.00.05.01.01.00.00.00.0
061.02.0469.02.00.00.00.00.00.00.05.00.00.00.01.00.0
071.00.00.00.01.00.00.01.0139.01.023.0312.01.00.00.01.0
083.01.0134.04.00.00.00.01.05.00.018.00.037.02.0265.010.0
091.030.07.07.01.00.00.02.09.0138.0169.0101.00.08.02.05.0
100.03.05.03.031.066.04.075.027.065.044.042.015.041.022.037.0
1116.026.014.017.032.063.06.074.09.032.012.022.021.039.020.077.0
1223.031.016.08.028.025.07.0100.014.013.018.07.029.060.053.048.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.7480.234-0.104-0.351-0.1040.525-0.6180.094-1.730.3560.0320.032-1.730.670.180.356
02-1.56-0.897-0.897-0.3510.064-0.748-2.5441.552-0.748-0.558-2.5440.935-0.897-1.074-1.561.195
03-1.414-1.56-0.820.234-1.56-2.544-2.5440.356-2.544-4.366-2.544-0.5020.0940.5821.3261.53
04-1.287-1.560.124-4.3660.032-0.897-0.449-4.3660.18-1.561.068-3.088-0.262-1.2871.925-4.366
051.175-4.366-4.366-4.3660.064-4.366-4.366-4.3662.425-4.366-1.73-3.088-3.088-4.366-4.366-4.366
06-3.088-2.5442.737-2.544-4.366-4.366-4.366-4.366-4.366-4.366-1.73-4.366-4.366-4.366-3.088-4.366
07-3.088-4.366-4.366-4.366-3.088-4.366-4.366-3.0881.523-3.088-0.2622.33-3.088-4.366-4.366-3.088
08-2.194-3.0881.487-1.936-4.366-4.366-4.366-3.088-1.73-4.366-0.502-4.3660.207-2.5442.167-1.074
09-3.0880.0-1.414-1.414-3.088-4.366-4.366-2.544-1.1751.5161.7181.205-4.366-1.287-2.544-1.73
10-4.366-2.194-1.73-2.1940.0320.782-1.9360.909-0.1040.7660.3790.333-0.6810.309-0.3060.207
11-0.618-0.141-0.748-0.5580.0640.735-1.560.895-1.1750.064-0.897-0.306-0.3510.259-0.3990.935
12-0.2620.032-0.618-1.287-0.068-0.18-1.4141.195-0.748-0.82-0.502-1.414-0.0330.6870.5640.465