Model info
| Transcription factor | Nkx2-1 | ||||||||
| Model | NKX21_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbWKGAGWGb | ||||||||
| Best auROC (human) | 0.923 | ||||||||
| Best auROC (mouse) | 0.92 | ||||||||
| Peak sets in benchmark (human) | 14 | ||||||||
| Peak sets in benchmark (mouse) | 9 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-2.1 {3.1.2.14} | ||||||||
| MGI | MGI:108067 | ||||||||
| EntrezGene | GeneID:21869 (SSTAR profile) | ||||||||
| UniProt ID | NKX21_MOUSE | ||||||||
| UniProt AC | P50220 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nkx2-1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 84.0 | 96.0 | 97.0 | 223.0 |
| 02 | 62.0 | 179.0 | 121.0 | 138.0 |
| 03 | 71.0 | 44.0 | 9.0 | 376.0 |
| 04 | 28.0 | 6.0 | 133.0 | 333.0 |
| 05 | 1.0 | 5.0 | 493.0 | 1.0 |
| 06 | 497.0 | 0.0 | 0.0 | 3.0 |
| 07 | 4.0 | 0.0 | 496.0 | 0.0 |
| 08 | 116.0 | 1.0 | 24.0 | 359.0 |
| 09 | 31.0 | 1.0 | 458.0 | 10.0 |
| 10 | 24.0 | 142.0 | 239.0 | 95.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.392 | -0.26 | -0.25 | 0.573 |
| 02 | -0.689 | 0.355 | -0.032 | 0.098 |
| 03 | -0.556 | -1.022 | -2.484 | 1.093 |
| 04 | -1.454 | -2.819 | 0.061 | 0.972 |
| 05 | -3.903 | -2.961 | 1.363 | -3.903 |
| 06 | 1.371 | -4.4 | -4.4 | -3.325 |
| 07 | -3.126 | -4.4 | 1.369 | -4.4 |
| 08 | -0.074 | -3.903 | -1.6 | 1.047 |
| 09 | -1.358 | -3.903 | 1.29 | -2.394 |
| 10 | -1.6 | 0.126 | 0.642 | -0.271 |