We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx2-1
ModelNKX21_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusbbWKGAGWGb
Best auROC (human)0.923
Best auROC (mouse)0.92
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)9
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNK-2.1 {3.1.2.14}
MGIMGI:108067
EntrezGeneGeneID:21869
(SSTAR profile)
UniProt IDNKX21_MOUSE
UniProt ACP50220
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.379415
0.0005 6.37003
0.0001 8.070045
GTEx tissue expression atlas Nkx2-1 expression
Motifs in JASPAR
PCM
ACGT
0184.096.097.0223.0
0262.0179.0121.0138.0
0371.044.09.0376.0
0428.06.0133.0333.0
051.05.0493.01.0
06497.00.00.03.0
074.00.0496.00.0
08116.01.024.0359.0
0931.01.0458.010.0
1024.0142.0239.095.0
PWM
ACGT
01-0.392-0.26-0.250.573
02-0.6890.355-0.0320.098
03-0.556-1.022-2.4841.093
04-1.454-2.8190.0610.972
05-3.903-2.9611.363-3.903
061.371-4.4-4.4-3.325
07-3.126-4.41.369-4.4
08-0.074-3.903-1.61.047
09-1.358-3.9031.29-2.394
10-1.60.1260.642-0.271