We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX2-2
(GeneCards)
ModelNKX22_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
D
Motif rank
0
ConsensusdSAGWGvh
Best auROC (human)0.492
Best auROC (mouse)0.789
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNK-2.2 {3.1.2.15}
HGNCHGNC:7835
EntrezGeneGeneID:4821
(SSTAR profile)
UniProt IDNKX22_HUMAN
UniProt ACO95096
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.500675
0.0005 5.766640000000001
0.0001 6.218565
GTEx tissue expression atlas NKX2-2 expression
ReMap ChIP-seq dataset list NKX2-2 datasets
Motifs in JASPAR
PCM
ACGT
01152.035.0146.0167.0
02104.0135.0259.02.0
03489.01.06.04.0
04140.06.0351.03.0
05230.00.037.0233.0
064.00.0495.01.0
0749.0148.0263.040.0
08132.0195.034.0139.0
PWM
ACGT
010.193-1.2420.1540.287
02-0.1810.0760.722-3.573
031.355-3.903-2.819-3.126
040.112-2.8191.025-3.325
050.604-4.4-1.1890.617
06-3.126-4.41.367-3.903
07-0.9180.1670.737-1.114
080.0540.44-1.270.105