Model info
| Transcription factor | NKX2-2 (GeneCards) | ||||||||
| Model | NKX22_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 8 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dSAGWGvh | ||||||||
| Best auROC (human) | 0.492 | ||||||||
| Best auROC (mouse) | 0.789 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 5 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-2.2 {3.1.2.15} | ||||||||
| HGNC | HGNC:7835 | ||||||||
| EntrezGene | GeneID:4821 (SSTAR profile) | ||||||||
| UniProt ID | NKX22_HUMAN | ||||||||
| UniProt AC | O95096 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NKX2-2 expression | ||||||||
| ReMap ChIP-seq dataset list | NKX2-2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 152.0 | 35.0 | 146.0 | 167.0 |
| 02 | 104.0 | 135.0 | 259.0 | 2.0 |
| 03 | 489.0 | 1.0 | 6.0 | 4.0 |
| 04 | 140.0 | 6.0 | 351.0 | 3.0 |
| 05 | 230.0 | 0.0 | 37.0 | 233.0 |
| 06 | 4.0 | 0.0 | 495.0 | 1.0 |
| 07 | 49.0 | 148.0 | 263.0 | 40.0 |
| 08 | 132.0 | 195.0 | 34.0 | 139.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.193 | -1.242 | 0.154 | 0.287 |
| 02 | -0.181 | 0.076 | 0.722 | -3.573 |
| 03 | 1.355 | -3.903 | -2.819 | -3.126 |
| 04 | 0.112 | -2.819 | 1.025 | -3.325 |
| 05 | 0.604 | -4.4 | -1.189 | 0.617 |
| 06 | -3.126 | -4.4 | 1.367 | -3.903 |
| 07 | -0.918 | 0.167 | 0.737 | -1.114 |
| 08 | 0.054 | 0.44 | -1.27 | 0.105 |