Transcription factor | NKX2-2 (GeneCards) | ||||||||
Model | NKX22_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 8 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | dSAGWGvh | ||||||||
Best auROC (human) | 0.492 | ||||||||
Best auROC (mouse) | 0.789 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 5 | ||||||||
Aligned words | 500 | ||||||||
TF family | NK-related factors {3.1.2} | ||||||||
TF subfamily | NK-2.2 {3.1.2.15} | ||||||||
HGNC | HGNC:7835 | ||||||||
EntrezGene | GeneID:4821 (SSTAR profile) | ||||||||
UniProt ID | NKX22_HUMAN | ||||||||
UniProt AC | O95096 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | NKX2-2 expression | ||||||||
ReMap ChIP-seq dataset list | NKX2-2 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 152.0 | 35.0 | 146.0 | 167.0 |
02 | 104.0 | 135.0 | 259.0 | 2.0 |
03 | 489.0 | 1.0 | 6.0 | 4.0 |
04 | 140.0 | 6.0 | 351.0 | 3.0 |
05 | 230.0 | 0.0 | 37.0 | 233.0 |
06 | 4.0 | 0.0 | 495.0 | 1.0 |
07 | 49.0 | 148.0 | 263.0 | 40.0 |
08 | 132.0 | 195.0 | 34.0 | 139.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.193 | -1.242 | 0.154 | 0.287 |
02 | -0.181 | 0.076 | 0.722 | -3.573 |
03 | 1.355 | -3.903 | -2.819 | -3.126 |
04 | 0.112 | -2.819 | 1.025 | -3.325 |
05 | 0.604 | -4.4 | -1.189 | 0.617 |
06 | -3.126 | -4.4 | 1.367 | -3.903 |
07 | -0.918 | 0.167 | 0.737 | -1.114 |
08 | 0.054 | 0.44 | -1.27 | 0.105 |