We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx2-2
ModelNKX22_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusnYbRAGTGbn
Best auROC (human)0.389
Best auROC (mouse)0.818
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words510
TF familyNK-related factors {3.1.2}
TF subfamilyNK-2.2 {3.1.2.15}
MGIMGI:97347
EntrezGeneGeneID:18088
(SSTAR profile)
UniProt IDNKX22_MOUSE
UniProt ACP42586
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.418804999999999
0.0005 13.388349999999999
0.0001 15.22665
GTEx tissue expression atlas Nkx2-2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
015.08.09.072.06.010.07.0141.06.017.012.0100.04.014.05.084.0
022.03.013.03.011.02.07.029.00.07.017.09.034.099.0149.0115.0
0313.01.032.01.070.01.038.02.065.04.0113.04.063.00.093.00.0
04210.01.00.00.06.00.00.00.0272.01.01.02.07.00.00.00.0
050.00.0495.00.00.00.02.00.00.00.01.00.00.00.02.00.0
060.00.00.00.00.00.00.00.0181.00.00.0319.00.00.00.00.0
071.00.0179.01.00.00.00.00.00.00.00.00.02.02.0315.00.0
080.00.03.00.00.00.02.00.020.0123.0257.094.00.00.01.00.0
094.09.03.04.019.041.013.050.035.094.087.047.013.025.032.024.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.77-1.328-1.2150.828-1.6-1.114-1.4541.497-1.6-0.599-0.9381.155-1.975-0.788-1.770.981
02-2.584-2.234-0.86-2.234-1.022-2.584-1.454-0.074-4.4-1.454-0.599-1.2150.0831.1451.5521.294
03-0.86-3.1260.023-3.1260.8-3.1260.193-2.5840.726-1.9751.276-1.9750.695-4.41.082-4.4
041.895-3.126-4.4-4.4-1.6-4.4-4.4-4.42.153-3.126-3.126-2.584-1.454-4.4-4.4-4.4
05-4.4-4.42.751-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.584-4.4
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.41.746-4.4-4.42.312-4.4-4.4-4.4-4.4
07-3.126-4.41.735-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.584-2.5842.299-4.4
08-4.4-4.4-2.234-4.4-4.4-4.4-2.584-4.4-0.4391.3612.0961.093-4.4-4.4-3.126-4.4
09-1.975-1.215-2.234-1.975-0.490.269-0.860.4650.1121.0931.0160.404-0.86-0.220.023-0.26