We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx2-2
ModelNKX22_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusbTbRAGWGbbb
Best auROC (human)0.399
Best auROC (mouse)0.82
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNK-2.2 {3.1.2.15}
MGIMGI:97347
EntrezGeneGeneID:18088
(SSTAR profile)
UniProt IDNKX22_MOUSE
UniProt ACP42586
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.571985
0.0005 6.403335
0.0001 7.597325
GTEx tissue expression atlas Nkx2-2 expression
Motifs in JASPAR
PCM
ACGT
0167.0207.0135.091.0
0213.036.048.0403.0
0347.0106.0195.0152.0
04217.025.0253.05.0
05498.01.00.01.0
062.03.0493.02.0
07184.00.025.0291.0
083.02.0493.02.0
0927.0125.0247.0101.0
1048.0192.0149.0111.0
1182.0109.0106.0203.0
PWM
ACGT
01-0.6130.50.076-0.313
02-2.163-1.215-0.9381.162
03-0.958-0.1630.440.193
040.546-1.5610.699-2.961
051.373-3.903-4.4-3.903
06-3.573-3.3251.363-3.573
070.383-4.4-1.5610.838
08-3.325-3.5731.363-3.573
09-1.4890.00.675-0.21
10-0.9380.4250.174-0.117
11-0.415-0.135-0.1630.48