Model info
| Transcription factor | Nkx2-2 | ||||||||
| Model | NKX22_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bTbRAGWGbbb | ||||||||
| Best auROC (human) | 0.399 | ||||||||
| Best auROC (mouse) | 0.82 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 5 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-2.2 {3.1.2.15} | ||||||||
| MGI | MGI:97347 | ||||||||
| EntrezGene | GeneID:18088 (SSTAR profile) | ||||||||
| UniProt ID | NKX22_MOUSE | ||||||||
| UniProt AC | P42586 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nkx2-2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 67.0 | 207.0 | 135.0 | 91.0 |
| 02 | 13.0 | 36.0 | 48.0 | 403.0 |
| 03 | 47.0 | 106.0 | 195.0 | 152.0 |
| 04 | 217.0 | 25.0 | 253.0 | 5.0 |
| 05 | 498.0 | 1.0 | 0.0 | 1.0 |
| 06 | 2.0 | 3.0 | 493.0 | 2.0 |
| 07 | 184.0 | 0.0 | 25.0 | 291.0 |
| 08 | 3.0 | 2.0 | 493.0 | 2.0 |
| 09 | 27.0 | 125.0 | 247.0 | 101.0 |
| 10 | 48.0 | 192.0 | 149.0 | 111.0 |
| 11 | 82.0 | 109.0 | 106.0 | 203.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.613 | 0.5 | 0.076 | -0.313 |
| 02 | -2.163 | -1.215 | -0.938 | 1.162 |
| 03 | -0.958 | -0.163 | 0.44 | 0.193 |
| 04 | 0.546 | -1.561 | 0.699 | -2.961 |
| 05 | 1.373 | -3.903 | -4.4 | -3.903 |
| 06 | -3.573 | -3.325 | 1.363 | -3.573 |
| 07 | 0.383 | -4.4 | -1.561 | 0.838 |
| 08 | -3.325 | -3.573 | 1.363 | -3.573 |
| 09 | -1.489 | 0.0 | 0.675 | -0.21 |
| 10 | -0.938 | 0.425 | 0.174 | -0.117 |
| 11 | -0.415 | -0.135 | -0.163 | 0.48 |