We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX2-3
(GeneCards)
ModelNKX23_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusndbAAGTGKbh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1260
TF familyNK-related factors {3.1.2}
TF subfamilyNK-4 {3.1.2.17}
HGNCHGNC:7836
EntrezGeneGeneID:159296
(SSTAR profile)
UniProt IDNKX23_HUMAN
UniProt ACQ8TAU0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.16738
0.0005 6.135795
0.0001 7.889045000000001
GTEx tissue expression atlas NKX2-3 expression
ReMap ChIP-seq dataset list NKX2-3 datasets
Motifs in JASPAR
MA0672.1 (NKX2-3; Homo sapiens)
PCM
ACGT
01173.996316.743380.69375.58
02190.57150.121159.521746.796
03106.746378.277164.808597.177
041142.0367.95675.26921.747
051173.0575.30463.4575.19
067.4266.2511224.8458.487
0732.3243.41936.1911175.073
0826.7527.1321203.879.254
0932.296132.814923.236158.662
10154.781246.436350.342495.45
11274.24246.818225.35500.6
PWM
ACGT
01-0.5790.0160.1990.185
02-0.489-0.725-0.6650.87
03-1.0610.192-0.6320.647
041.294-3.472-1.403-2.59
051.321-3.79-1.57-3.806
06-3.528-3.6641.364-3.419
07-2.218-4.099-2.1111.323
08-2.397-3.561.347-3.347
09-2.219-0.8461.082-0.67
10-0.694-0.2340.1160.461
11-0.127-0.232-0.3220.471