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Model info
Transcription factorNKX2-5
(GeneCards)
ModelNKX25_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
0
ConsensusnhdGAGWGbn
Best auROC (human)0.749
Best auROC (mouse)0.889
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words518
TF familyNK-related factors {3.1.2}
TF subfamilyNK-4 {3.1.2.17}
HGNCHGNC:2488
EntrezGeneGeneID:1482
(SSTAR profile)
UniProt IDNKX25_HUMAN
UniProt ACP52952
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.092925000000001
0.0005 12.51905
0.0001 14.772925
GTEx tissue expression atlas NKX2-5 expression
ReMap ChIP-seq dataset list NKX2-5 datasets
Motifs in JASPAR
MA0063.1 (Nkx2-5; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
019.09.016.037.040.012.04.0116.037.025.012.063.014.012.017.071.0
0210.03.034.053.016.06.01.035.07.03.010.029.027.015.095.0150.0
036.03.051.00.018.02.05.02.038.01.0101.00.043.03.0221.00.0
04104.00.00.01.09.00.00.00.0375.02.00.01.02.00.00.00.0
052.00.0487.01.00.00.02.00.00.00.00.00.00.00.02.00.0
060.00.00.02.00.00.00.00.0165.02.016.0308.00.00.00.01.0
078.00.0148.09.00.00.00.02.02.01.013.00.028.01.0276.06.0
080.022.013.03.00.02.00.00.046.0121.0214.056.02.06.09.00.0
096.015.013.014.030.040.06.075.051.094.066.025.016.012.014.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.203-1.203-0.6460.1790.256-0.926-1.9641.3150.179-0.208-0.9260.707-0.776-0.926-0.5870.826
02-1.102-2.2220.0950.535-0.646-1.588-3.1150.124-1.443-2.222-1.102-0.062-0.132-0.7091.1161.571
03-1.588-2.2220.497-4.39-0.531-2.572-1.758-2.5720.205-3.1151.177-4.390.328-2.2221.957-4.39
041.206-4.39-4.39-3.115-1.203-4.39-4.39-4.392.486-2.572-4.39-3.115-2.572-4.39-4.39-4.39
05-2.572-4.392.747-3.115-4.39-4.39-2.572-4.39-4.39-4.39-4.39-4.39-4.39-4.39-2.572-4.39
06-4.39-4.39-4.39-2.572-4.39-4.39-4.39-4.391.666-2.572-0.6462.289-4.39-4.39-4.39-3.115
07-1.316-4.391.557-1.203-4.39-4.39-4.39-2.572-2.572-3.115-0.848-4.39-0.096-3.1152.179-1.588
08-4.39-0.334-0.848-2.222-4.39-2.572-4.39-4.390.3951.3571.9250.59-2.572-1.588-1.203-4.39
09-1.588-0.709-0.848-0.776-0.0280.256-1.5880.880.4971.1050.753-0.208-0.646-0.926-0.776-0.587