We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX2-5
(GeneCards)
ModelNKX25_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length8
Quality
B
Motif rank
0
ConsensusbbRAGWGv
Best auROC (human)0.697
Best auROC (mouse)0.86
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words499
TF familyNK-related factors {3.1.2}
TF subfamilyNK-4 {3.1.2.17}
HGNCHGNC:2488
EntrezGeneGeneID:1482
(SSTAR profile)
UniProt IDNKX25_HUMAN
UniProt ACP52952
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.508195000000001
0.0005 5.9641
0.0001 6.755
GTEx tissue expression atlas NKX2-5 expression
ReMap ChIP-seq dataset list NKX2-5 datasets
Motifs in JASPAR
PCM
ACGT
0153.082.0155.0209.0
0238.057.0268.0136.0
03211.017.0259.012.0
04489.08.00.02.0
0518.02.0479.00.0
06272.030.09.0188.0
0799.01.0384.015.0
0884.0151.0242.022.0
PWM
ACGT
01-0.84-0.4130.2150.511
02-1.161-0.7690.7580.085
030.521-1.9180.724-2.232
041.357-2.582-4.398-3.571
05-1.866-3.5711.336-4.398
060.773-1.387-2.4820.406
07-0.228-3.9011.116-2.032
08-0.390.1890.657-1.679