We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx2-5
ModelNKX25_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusnbhKGAGTGbn
Best auROC (human)0.662
Best auROC (mouse)0.882
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words525
TF familyNK-related factors {3.1.2}
TF subfamilyNK-4 {3.1.2.17}
MGIMGI:97350
EntrezGeneGeneID:18091
(SSTAR profile)
UniProt IDNKX25_MOUSE
UniProt ACP42582
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.819354999999998
0.0005 12.934180000000001
0.0001 15.99478
GTEx tissue expression atlas Nkx2-5 expression
Motifs in JASPAR
MA0063.1 (Nkx2-5; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0113.052.047.013.019.041.06.030.05.055.047.08.010.065.065.024.0
0212.013.02.020.066.039.09.099.034.044.02.085.09.019.05.042.0
0318.03.041.059.011.01.02.0101.00.03.04.011.010.01.088.0147.0
040.00.039.00.00.00.08.00.013.00.0122.00.021.00.0296.01.0
0534.00.00.00.00.00.00.00.0464.01.00.00.01.00.00.00.0
061.00.0498.00.00.00.01.00.00.00.00.00.00.00.00.00.0
070.00.00.01.00.00.00.00.0151.00.01.0347.00.00.00.00.0
082.00.0148.01.00.00.00.00.00.00.01.00.09.03.0334.02.0
090.07.04.00.00.01.00.02.011.0158.0212.0102.00.01.02.00.0
103.04.01.03.031.059.08.069.059.066.060.033.012.028.026.038.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.860.5040.404-0.86-0.490.269-1.6-0.04-1.770.560.404-1.328-1.1140.7260.726-0.26
02-0.938-0.86-2.584-0.4390.7410.219-1.2151.1450.0830.339-2.5840.993-1.215-0.49-1.770.293
03-0.543-2.2340.2690.63-1.022-3.126-2.5841.165-4.4-2.234-1.975-1.022-1.114-3.1261.0271.539
04-4.4-4.40.219-4.4-4.4-4.4-1.328-4.4-0.86-4.41.353-4.4-0.392-4.42.237-3.126
050.083-4.4-4.4-4.4-4.4-4.4-4.4-4.42.686-3.126-4.4-4.4-3.126-4.4-4.4-4.4
06-3.126-4.42.757-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
07-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.41.565-4.4-3.1262.396-4.4-4.4-4.4-4.4
08-2.584-4.41.545-3.126-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-1.215-2.2342.358-2.584
09-4.4-1.454-1.975-4.4-4.4-3.126-4.4-2.584-1.0221.6111.9041.174-4.4-3.126-2.584-4.4
10-2.234-1.975-3.126-2.234-0.0080.63-1.3280.7850.630.7410.6460.054-0.938-0.108-0.1810.193