Model info
| Transcription factor | Nkx2-5 | ||||||||
| Model | NKX25_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nbYbRAGWGS | ||||||||
| Best auROC (human) | 0.612 | ||||||||
| Best auROC (mouse) | 0.896 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-4 {3.1.2.17} | ||||||||
| MGI | MGI:97350 | ||||||||
| EntrezGene | GeneID:18091 (SSTAR profile) | ||||||||
| UniProt ID | NKX25_MOUSE | ||||||||
| UniProt AC | P42582 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nkx2-5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 111.0 | 79.0 | 125.0 | 185.0 |
| 02 | 9.0 | 212.0 | 175.0 | 104.0 |
| 03 | 6.0 | 133.0 | 69.0 | 292.0 |
| 04 | 17.0 | 137.0 | 177.0 | 169.0 |
| 05 | 191.0 | 20.0 | 277.0 | 12.0 |
| 06 | 498.0 | 0.0 | 1.0 | 1.0 |
| 07 | 1.0 | 3.0 | 492.0 | 4.0 |
| 08 | 91.0 | 28.0 | 9.0 | 372.0 |
| 09 | 9.0 | 6.0 | 469.0 | 16.0 |
| 10 | 14.0 | 167.0 | 272.0 | 47.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.117 | -0.452 | 0.0 | 0.388 |
| 02 | -2.484 | 0.523 | 0.333 | -0.181 |
| 03 | -2.819 | 0.061 | -0.584 | 0.841 |
| 04 | -1.92 | 0.091 | 0.344 | 0.298 |
| 05 | 0.42 | -1.77 | 0.789 | -2.234 |
| 06 | 1.373 | -4.4 | -3.903 | -3.903 |
| 07 | -3.903 | -3.325 | 1.361 | -3.126 |
| 08 | -0.313 | -1.454 | -2.484 | 1.082 |
| 09 | -2.484 | -2.819 | 1.313 | -1.975 |
| 10 | -2.096 | 0.287 | 0.771 | -0.958 |