Transcription factor | Nkx2-5 | ||||||||
Model | NKX25_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbYbRAGWGS | ||||||||
Best auROC (human) | 0.612 | ||||||||
Best auROC (mouse) | 0.896 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 7 | ||||||||
Aligned words | 500 | ||||||||
TF family | NK-related factors {3.1.2} | ||||||||
TF subfamily | NK-4 {3.1.2.17} | ||||||||
MGI | MGI:97350 | ||||||||
EntrezGene | GeneID:18091 (SSTAR profile) | ||||||||
UniProt ID | NKX25_MOUSE | ||||||||
UniProt AC | P42582 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nkx2-5 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 111.0 | 79.0 | 125.0 | 185.0 |
02 | 9.0 | 212.0 | 175.0 | 104.0 |
03 | 6.0 | 133.0 | 69.0 | 292.0 |
04 | 17.0 | 137.0 | 177.0 | 169.0 |
05 | 191.0 | 20.0 | 277.0 | 12.0 |
06 | 498.0 | 0.0 | 1.0 | 1.0 |
07 | 1.0 | 3.0 | 492.0 | 4.0 |
08 | 91.0 | 28.0 | 9.0 | 372.0 |
09 | 9.0 | 6.0 | 469.0 | 16.0 |
10 | 14.0 | 167.0 | 272.0 | 47.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.117 | -0.452 | 0.0 | 0.388 |
02 | -2.484 | 0.523 | 0.333 | -0.181 |
03 | -2.819 | 0.061 | -0.584 | 0.841 |
04 | -1.92 | 0.091 | 0.344 | 0.298 |
05 | 0.42 | -1.77 | 0.789 | -2.234 |
06 | 1.373 | -4.4 | -3.903 | -3.903 |
07 | -3.903 | -3.325 | 1.361 | -3.126 |
08 | -0.313 | -1.454 | -2.484 | 1.082 |
09 | -2.484 | -2.819 | 1.313 | -1.975 |
10 | -2.096 | 0.287 | 0.771 | -0.958 |