We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx2-5
ModelNKX25_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusnbYbRAGWGS
Best auROC (human)0.612
Best auROC (mouse)0.896
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNK-4 {3.1.2.17}
MGIMGI:97350
EntrezGeneGeneID:18091
(SSTAR profile)
UniProt IDNKX25_MOUSE
UniProt ACP42582
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.21369
0.0005 6.1152999999999995
0.0001 7.556985000000001
GTEx tissue expression atlas Nkx2-5 expression
Motifs in JASPAR
MA0063.1 (Nkx2-5; Mus musculus)
PCM
ACGT
01111.079.0125.0185.0
029.0212.0175.0104.0
036.0133.069.0292.0
0417.0137.0177.0169.0
05191.020.0277.012.0
06498.00.01.01.0
071.03.0492.04.0
0891.028.09.0372.0
099.06.0469.016.0
1014.0167.0272.047.0
PWM
ACGT
01-0.117-0.4520.00.388
02-2.4840.5230.333-0.181
03-2.8190.061-0.5840.841
04-1.920.0910.3440.298
050.42-1.770.789-2.234
061.373-4.4-3.903-3.903
07-3.903-3.3251.361-3.126
08-0.313-1.454-2.4841.082
09-2.484-2.8191.313-1.975
10-2.0960.2870.771-0.958