Model info
| Transcription factor | Nkx2-8 | ||||||||
| Model | NKX28_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bTCAAGGAb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 6 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-2.2 {3.1.2.15} | ||||||||
| MGI | MGI:1270158 | ||||||||
| EntrezGene | GeneID:18094 (SSTAR profile) | ||||||||
| UniProt ID | NKX28_MOUSE | ||||||||
| UniProt AC | O70584 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nkx2-8 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.147 | 1.206 | 1.206 | 3.441 |
| 02 | 0.0 | 0.0 | 0.0 | 6.0 |
| 03 | 0.0 | 4.647 | 1.353 | 0.0 |
| 04 | 5.706 | 0.0 | 0.294 | 0.0 |
| 05 | 6.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 6.0 | 0.0 |
| 07 | 0.0 | 0.0 | 3.588 | 2.412 |
| 08 | 3.588 | 0.0 | 2.412 | 0.0 |
| 09 | 0.147 | 3.441 | 1.206 | 1.206 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.186 | -0.164 | -0.164 | 0.691 |
| 02 | -1.47 | -1.47 | -1.47 | 1.197 |
| 03 | -1.47 | 0.961 | -0.078 | -1.47 |
| 04 | 1.15 | -1.47 | -0.965 | -1.47 |
| 05 | 1.197 | -1.47 | -1.47 | -1.47 |
| 06 | -1.47 | -1.47 | 1.197 | -1.47 |
| 07 | -1.47 | -1.47 | 0.729 | 0.384 |
| 08 | 0.729 | -1.47 | 0.384 | -1.47 |
| 09 | -1.186 | 0.691 | -0.164 | -0.164 |