We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX3-1
(GeneCards)
ModelNKX31_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusnbWRWGTRYYh
Best auROC (human)0.844
Best auROC (mouse)0.798
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)10
Aligned words427
TF familyNK-related factors {3.1.2}
TF subfamilyNK-3 {3.1.2.16}
HGNCHGNC:7838
EntrezGeneGeneID:4824
(SSTAR profile)
UniProt IDNKX31_HUMAN
UniProt ACQ99801
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.309615
0.0005 12.447295
0.0001 14.256485
GTEx tissue expression atlas NKX3-1 expression
ReMap ChIP-seq dataset list NKX3-1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0135.029.040.025.09.013.02.052.013.015.010.040.06.044.040.050.0
023.01.01.058.021.09.03.068.012.05.09.066.015.011.022.0119.0
0321.01.028.01.020.00.06.00.026.00.09.00.0153.07.0149.02.0
04126.00.05.089.04.00.00.04.067.01.04.0120.01.00.00.02.0
050.00.0176.022.00.00.00.01.00.00.08.01.00.00.069.0146.0
060.00.00.00.00.00.00.00.011.00.016.0226.02.00.09.0159.0
071.00.012.00.00.00.00.00.013.00.012.00.0130.00.0250.05.0
080.0119.04.021.00.00.00.00.02.0146.045.081.00.05.00.00.0
091.00.00.01.049.063.04.0154.07.012.05.025.018.019.01.064.0
1014.013.017.031.038.022.04.030.04.02.01.03.027.039.033.0145.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.2770.0910.409-0.055-1.051-0.695-2.4230.67-0.695-0.556-0.9490.409-1.4360.5040.4090.631
02-2.072-2.968-2.9680.778-0.227-1.051-2.0720.936-0.773-1.607-1.0510.906-0.556-0.857-0.1811.493
03-0.227-2.9680.057-2.968-0.275-4.262-1.436-4.262-0.016-4.262-1.051-4.2621.744-1.291.718-2.423
041.55-4.262-1.6071.204-1.812-4.262-4.262-1.8120.921-2.968-1.8121.502-2.968-4.262-4.262-2.423
05-4.262-4.2621.884-0.181-4.262-4.262-4.262-2.968-4.262-4.262-1.163-2.968-4.262-4.2620.9511.697
06-4.262-4.262-4.262-4.262-4.262-4.262-4.262-4.262-0.857-4.262-0.4932.133-2.423-4.262-1.0511.782
07-2.968-4.262-0.773-4.262-4.262-4.262-4.262-4.262-0.695-4.262-0.773-4.2621.581-4.2622.234-1.607
08-4.2621.493-1.812-0.227-4.262-4.262-4.262-4.262-2.4231.6970.5261.11-4.262-1.607-4.262-4.262
09-2.968-4.262-4.262-2.9680.6110.86-1.8121.75-1.29-0.773-1.607-0.055-0.378-0.325-2.9680.876
10-0.623-0.695-0.4340.1570.359-0.181-1.8120.125-1.812-2.423-2.968-2.0720.0210.3840.2191.69