We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx3-1
ModelNKX31_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusnbdRAGTGbYWd
Best auROC (human)0.792
Best auROC (mouse)0.662
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)10
Aligned words501
TF familyNK-related factors {3.1.2}
TF subfamilyNK-3 {3.1.2.16}
MGIMGI:97352
EntrezGeneGeneID:18095
(SSTAR profile)
UniProt IDNKX31_MOUSE
UniProt ACP97436
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.625629999999999
0.0005 6.399335000000001
0.0001 7.85392
GTEx tissue expression atlas Nkx3-1 expression
Motifs in JASPAR
PCM
ACGT
0195.098.0161.0146.0
0243.0126.049.0282.0
03126.054.076.0244.0
04380.027.086.07.0
05480.01.010.09.0
062.02.0493.03.0
0744.01.09.0446.0
0885.07.0402.06.0
099.0226.0133.0132.0
1071.0128.019.0282.0
1178.043.053.0326.0
12140.042.0148.0170.0
PWM
ACGT
01-0.271-0.240.250.154
02-1.0440.008-0.9180.807
030.008-0.823-0.490.663
041.104-1.489-0.368-2.694
051.336-3.903-2.394-2.484
06-3.573-3.5731.363-3.325
07-1.022-3.903-2.4841.263
08-0.38-2.6941.16-2.819
09-2.4840.5870.0610.054
10-0.5560.023-1.8180.807
11-0.464-1.044-0.8410.951
120.112-1.0670.1670.304