We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx3-2
ModelNKX32_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusnWTAAGTGbdYn
Best auROC (human)
Best auROC (mouse)0.979
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)6
Aligned words585
TF familyNK-related factors {3.1.2}
TF subfamilyNK-3 {3.1.2.16}
MGIMGI:108015
EntrezGeneGeneID:12020
(SSTAR profile)
UniProt IDNKX32_MOUSE
UniProt ACP97503
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.543610000000001
0.0005 11.600155
0.0001 16.14393
GTEx tissue expression atlas Nkx3-2 expression
Motifs in JASPAR
MA0122.1 (Nkx3-2; Mus musculus)
MA0122.2 (NKX3-2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.022.010.082.016.011.04.048.027.012.05.058.036.07.027.098.0
020.06.02.093.00.04.00.048.02.02.04.038.015.07.09.0255.0
0317.00.00.00.018.01.00.00.014.01.00.00.0411.011.012.00.0
04458.01.00.01.012.01.00.00.012.00.00.00.00.00.00.00.0
050.00.0481.01.00.00.02.00.00.00.00.00.00.00.01.00.0
060.00.00.00.00.00.00.00.02.00.015.0467.00.00.00.01.0
070.00.02.00.00.00.00.00.01.01.013.00.09.02.0457.00.0
080.04.03.03.00.02.01.00.019.083.0157.0213.00.00.00.00.0
094.03.06.06.023.011.05.050.058.022.018.063.043.026.072.075.0
1019.032.08.069.014.016.02.030.010.013.04.074.033.031.015.0115.0
1119.020.020.017.037.010.05.040.07.05.08.09.079.033.0102.074.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.316-0.316-1.0840.987-0.628-0.992-1.9460.455-0.114-0.908-1.740.6430.17-1.425-0.1141.165
02-4.375-1.57-2.5541.113-4.375-1.946-4.3750.455-2.554-2.554-1.9460.223-0.691-1.425-1.1852.119
03-0.569-4.375-4.375-4.375-0.513-3.097-4.375-4.375-0.758-3.097-4.375-4.3752.595-0.992-0.908-4.375
042.703-3.097-4.375-3.097-0.908-3.097-4.375-4.375-0.908-4.375-4.375-4.375-4.375-4.375-4.375-4.375
05-4.375-4.3752.752-3.097-4.375-4.375-2.554-4.375-4.375-4.375-4.375-4.375-4.375-4.375-3.097-4.375
06-4.375-4.375-4.375-4.375-4.375-4.375-4.375-4.375-2.554-4.375-0.6912.723-4.375-4.375-4.375-3.097
07-4.375-4.375-2.554-4.375-4.375-4.375-4.375-4.375-3.097-3.097-0.83-4.375-1.185-2.5542.701-4.375
08-4.375-1.946-2.204-2.204-4.375-2.554-3.097-4.375-0.460.9991.6341.939-4.375-4.375-4.375-4.375
09-1.946-2.204-1.57-1.57-0.272-0.992-1.740.4950.643-0.316-0.5130.7250.346-0.1510.8580.898
10-0.460.054-1.2980.815-0.758-0.628-2.554-0.01-1.084-0.83-1.9460.8850.0840.022-0.6911.324
11-0.46-0.409-0.409-0.5690.197-1.084-1.740.274-1.425-1.74-1.298-1.1850.950.0841.2050.885