Model info
| Transcription factor | Nkx3-2 | ||||||||
| Model | NKX32_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WTAAGTGbhh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.982 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 6 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-3 {3.1.2.16} | ||||||||
| MGI | MGI:108015 | ||||||||
| EntrezGene | GeneID:12020 (SSTAR profile) | ||||||||
| UniProt ID | NKX32_MOUSE | ||||||||
| UniProt AC | P97503 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nkx3-2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 75.0 | 44.0 | 40.0 | 339.0 |
| 02 | 17.0 | 0.0 | 12.0 | 469.0 |
| 03 | 467.0 | 2.0 | 28.0 | 1.0 |
| 04 | 496.0 | 0.0 | 1.0 | 1.0 |
| 05 | 1.0 | 1.0 | 483.0 | 13.0 |
| 06 | 9.0 | 0.0 | 7.0 | 482.0 |
| 07 | 43.0 | 0.0 | 447.0 | 8.0 |
| 08 | 26.0 | 128.0 | 151.0 | 193.0 |
| 09 | 124.0 | 66.0 | 63.0 | 245.0 |
| 10 | 100.0 | 81.0 | 31.0 | 286.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.499 | -1.018 | -1.11 | 0.994 |
| 02 | -1.916 | -4.397 | -2.23 | 1.317 |
| 03 | 1.313 | -3.569 | -1.451 | -3.9 |
| 04 | 1.373 | -4.397 | -3.9 | -3.9 |
| 05 | -3.9 | -3.9 | 1.347 | -2.159 |
| 06 | -2.48 | -4.397 | -2.69 | 1.344 |
| 07 | -1.04 | -4.397 | 1.269 | -2.58 |
| 08 | -1.521 | 0.027 | 0.191 | 0.434 |
| 09 | -0.004 | -0.624 | -0.669 | 0.671 |
| 10 | -0.216 | -0.423 | -1.354 | 0.825 |