We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx3-2
ModelNKX32_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
0
ConsensusWTAAGTGbhh
Best auROC (human)
Best auROC (mouse)0.982
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)6
Aligned words501
TF familyNK-related factors {3.1.2}
TF subfamilyNK-3 {3.1.2.16}
MGIMGI:108015
EntrezGeneGeneID:12020
(SSTAR profile)
UniProt IDNKX32_MOUSE
UniProt ACP97503
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.013465
0.0005 5.973649999999999
0.0001 8.080549999999999
GTEx tissue expression atlas Nkx3-2 expression
Motifs in JASPAR
PCM
ACGT
0175.044.040.0339.0
0217.00.012.0469.0
03467.02.028.01.0
04496.00.01.01.0
051.01.0483.013.0
069.00.07.0482.0
0743.00.0447.08.0
0826.0128.0151.0193.0
09124.066.063.0245.0
10100.081.031.0286.0
PWM
ACGT
01-0.499-1.018-1.110.994
02-1.916-4.397-2.231.317
031.313-3.569-1.451-3.9
041.373-4.397-3.9-3.9
05-3.9-3.91.347-2.159
06-2.48-4.397-2.691.344
07-1.04-4.3971.269-2.58
08-1.5210.0270.1910.434
09-0.004-0.624-0.6690.671
10-0.216-0.423-1.3540.825