We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX6-1
(GeneCards)
ModelNKX61_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
B
Motif rank
0
ConsensusddRhdRATKdvndWWWRAWddn
Best auROC (human)0.462
Best auROC (mouse)0.978
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)8
Aligned words503
TF familyNK-related factors {3.1.2}
TF subfamilyNK-6 {3.1.2.19}
HGNCHGNC:7839
EntrezGeneGeneID:4825
(SSTAR profile)
UniProt IDNKX61_HUMAN
UniProt ACP78426
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.52536
0.0005 13.28836
0.0001 16.92896
GTEx tissue expression atlas NKX6-1 expression
ReMap ChIP-seq dataset list NKX6-1 datasets
Motifs in JASPAR
MA0674.1 (NKX6-1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0142.012.0108.015.034.012.09.017.025.011.023.014.031.08.0117.022.0
0296.07.026.03.013.015.05.010.0210.017.017.013.033.05.020.010.0
0362.071.035.0184.09.015.06.014.016.022.03.027.05.015.03.013.0
0439.06.011.036.060.02.05.056.013.00.013.021.045.013.041.0139.0
05115.09.030.03.014.01.03.03.030.03.030.07.0153.010.068.021.0
06305.01.05.01.023.00.00.00.0129.00.01.01.033.00.01.00.0
0720.025.048.0397.01.00.00.00.00.01.00.06.00.00.01.01.0
084.03.08.06.02.00.012.012.03.013.07.026.024.034.0243.0103.0
098.04.014.07.030.05.05.010.0101.026.0105.038.046.03.075.023.0
1015.064.095.011.017.010.06.05.026.074.068.031.010.014.044.010.0
1116.017.017.018.060.026.07.069.076.050.043.044.013.012.014.018.0
1291.07.024.043.044.08.05.048.047.07.08.019.051.07.016.075.0
13126.06.012.089.07.03.00.019.028.01.03.021.043.012.07.0123.0
14112.02.015.075.05.01.01.015.07.00.01.014.037.017.08.0190.0
1529.028.09.095.07.03.01.09.06.06.01.012.025.024.08.0237.0
1634.08.025.00.039.013.05.04.011.01.07.00.0224.032.085.012.0
17302.00.03.03.054.00.00.00.0118.00.04.00.016.00.00.00.0
1862.018.032.0378.00.00.00.00.00.03.01.03.02.00.00.01.0
1910.07.027.020.011.01.04.05.04.00.015.014.053.032.0156.0141.0
2022.07.047.02.017.07.07.09.0103.024.056.019.051.08.089.032.0
2134.058.071.030.021.09.03.013.042.073.054.030.011.013.030.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.293-0.9381.231-0.7210.083-0.938-1.215-0.599-0.22-1.022-0.302-0.788-0.008-1.3281.311-0.346
021.114-1.454-0.181-2.234-0.86-0.721-1.77-1.1141.895-0.599-0.599-0.860.054-1.77-0.439-1.114
030.6790.8140.1121.763-1.215-0.721-1.6-0.788-0.658-0.346-2.234-0.144-1.77-0.721-2.234-0.86
040.219-1.6-1.0220.140.646-2.584-1.770.578-0.86-4.4-0.86-0.3920.361-0.860.2691.483
051.294-1.215-0.04-2.234-0.788-3.126-2.234-2.234-0.04-2.234-0.04-1.4541.579-1.1140.771-0.392
062.267-3.126-1.77-3.126-0.302-4.4-4.4-4.41.408-4.4-3.126-3.1260.054-4.4-3.126-4.4
07-0.439-0.220.4252.531-3.126-4.4-4.4-4.4-4.4-3.126-4.4-1.6-4.4-4.4-3.126-3.126
08-1.975-2.234-1.328-1.6-2.584-4.4-0.938-0.938-2.234-0.86-1.454-0.181-0.260.0832.041.184
09-1.328-1.975-0.788-1.454-0.04-1.77-1.77-1.1141.165-0.1811.2030.1930.383-2.2340.868-0.302
10-0.7210.7111.104-1.022-0.599-1.114-1.6-1.77-0.1810.8550.771-0.008-1.114-0.7880.339-1.114
11-0.658-0.599-0.599-0.5430.646-0.181-1.4540.7850.8810.4650.3160.339-0.86-0.938-0.788-0.543
121.061-1.454-0.260.3160.339-1.328-1.770.4250.404-1.454-1.328-0.490.485-1.454-0.6580.868
131.385-1.6-0.9381.039-1.454-2.234-4.4-0.49-0.108-3.126-2.234-0.3920.316-0.938-1.4541.361
141.268-2.584-0.7210.868-1.77-3.126-3.126-0.721-1.454-4.4-3.126-0.7880.167-0.599-1.3281.795
15-0.074-0.108-1.2151.104-1.454-2.234-3.126-1.215-1.6-1.6-3.126-0.938-0.22-0.26-1.3282.015
160.083-1.328-0.22-4.40.219-0.86-1.77-1.975-1.022-3.126-1.454-4.41.9590.0230.993-0.938
172.257-4.4-2.234-2.2340.542-4.4-4.4-4.41.32-4.4-1.975-4.4-0.658-4.4-4.4-4.4
180.679-0.5430.0232.482-4.4-4.4-4.4-4.4-4.4-2.234-3.126-2.234-2.584-4.4-4.4-3.126
19-1.114-1.454-0.144-0.439-1.022-3.126-1.975-1.77-1.975-4.4-0.721-0.7880.5230.0231.5981.497
20-0.346-1.4540.404-2.584-0.599-1.454-1.454-1.2151.184-0.260.578-0.490.485-1.3281.0390.023
210.0830.6130.814-0.04-0.392-1.215-2.234-0.860.2930.8410.542-0.04-1.022-0.86-0.04-1.328