We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX6-1
(GeneCards)
ModelNKX61_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusvRhdRATKdvndWWWRAWd
Best auROC (human)0.433
Best auROC (mouse)0.961
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)8
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNK-6 {3.1.2.19}
HGNCHGNC:7839
EntrezGeneGeneID:4825
(SSTAR profile)
UniProt IDNKX61_HUMAN
UniProt ACP78426
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.86816
0.0005 6.72306
0.0001 8.470410000000001
GTEx tissue expression atlas NKX6-1 expression
ReMap ChIP-seq dataset list NKX6-1 datasets
Motifs in JASPAR
PCM
ACGT
01122.059.0263.056.0
02353.044.075.028.0
0384.0135.046.0235.0
04156.025.059.0260.0
05304.030.0133.033.0
06493.01.04.02.0
0715.023.062.0400.0
0821.046.0280.0153.0
09189.037.0200.074.0
1063.0168.0216.053.0
11167.0108.079.0146.0
12230.030.053.0187.0
13195.028.021.0256.0
14149.028.024.0299.0
1569.052.026.0353.0
16298.054.0127.021.0
17490.00.07.03.0
1863.015.035.0387.0
1977.046.0199.0178.0
PWM
ACGT
01-0.024-0.7370.737-0.788
021.03-1.022-0.503-1.454
03-0.3920.076-0.9790.626
040.219-1.561-0.7370.726
050.881-1.3890.061-1.298
061.363-3.903-3.126-3.573
07-2.034-1.64-0.6891.155
08-1.725-0.9790.80.2
090.409-1.1890.465-0.516
10-0.6730.2930.542-0.841
110.287-0.144-0.4520.154
120.604-1.389-0.8410.399
130.44-1.454-1.7250.711
140.174-1.454-1.60.865
15-0.584-0.86-1.5251.03
160.862-0.8230.016-1.725
171.357-4.4-2.694-3.325
18-0.673-2.034-1.2421.122
19-0.477-0.9790.460.35