Model info
| Transcription factor | NKX6-1 (GeneCards) | ||||||||
| Model | NKX61_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRhdRATKdvndWWWRAWd | ||||||||
| Best auROC (human) | 0.433 | ||||||||
| Best auROC (mouse) | 0.961 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-6 {3.1.2.19} | ||||||||
| HGNC | HGNC:7839 | ||||||||
| EntrezGene | GeneID:4825 (SSTAR profile) | ||||||||
| UniProt ID | NKX61_HUMAN | ||||||||
| UniProt AC | P78426 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NKX6-1 expression | ||||||||
| ReMap ChIP-seq dataset list | NKX6-1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 122.0 | 59.0 | 263.0 | 56.0 |
| 02 | 353.0 | 44.0 | 75.0 | 28.0 |
| 03 | 84.0 | 135.0 | 46.0 | 235.0 |
| 04 | 156.0 | 25.0 | 59.0 | 260.0 |
| 05 | 304.0 | 30.0 | 133.0 | 33.0 |
| 06 | 493.0 | 1.0 | 4.0 | 2.0 |
| 07 | 15.0 | 23.0 | 62.0 | 400.0 |
| 08 | 21.0 | 46.0 | 280.0 | 153.0 |
| 09 | 189.0 | 37.0 | 200.0 | 74.0 |
| 10 | 63.0 | 168.0 | 216.0 | 53.0 |
| 11 | 167.0 | 108.0 | 79.0 | 146.0 |
| 12 | 230.0 | 30.0 | 53.0 | 187.0 |
| 13 | 195.0 | 28.0 | 21.0 | 256.0 |
| 14 | 149.0 | 28.0 | 24.0 | 299.0 |
| 15 | 69.0 | 52.0 | 26.0 | 353.0 |
| 16 | 298.0 | 54.0 | 127.0 | 21.0 |
| 17 | 490.0 | 0.0 | 7.0 | 3.0 |
| 18 | 63.0 | 15.0 | 35.0 | 387.0 |
| 19 | 77.0 | 46.0 | 199.0 | 178.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.024 | -0.737 | 0.737 | -0.788 |
| 02 | 1.03 | -1.022 | -0.503 | -1.454 |
| 03 | -0.392 | 0.076 | -0.979 | 0.626 |
| 04 | 0.219 | -1.561 | -0.737 | 0.726 |
| 05 | 0.881 | -1.389 | 0.061 | -1.298 |
| 06 | 1.363 | -3.903 | -3.126 | -3.573 |
| 07 | -2.034 | -1.64 | -0.689 | 1.155 |
| 08 | -1.725 | -0.979 | 0.8 | 0.2 |
| 09 | 0.409 | -1.189 | 0.465 | -0.516 |
| 10 | -0.673 | 0.293 | 0.542 | -0.841 |
| 11 | 0.287 | -0.144 | -0.452 | 0.154 |
| 12 | 0.604 | -1.389 | -0.841 | 0.399 |
| 13 | 0.44 | -1.454 | -1.725 | 0.711 |
| 14 | 0.174 | -1.454 | -1.6 | 0.865 |
| 15 | -0.584 | -0.86 | -1.525 | 1.03 |
| 16 | 0.862 | -0.823 | 0.016 | -1.725 |
| 17 | 1.357 | -4.4 | -2.694 | -3.325 |
| 18 | -0.673 | -2.034 | -1.242 | 1.122 |
| 19 | -0.477 | -0.979 | 0.46 | 0.35 |