We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX6-1
(GeneCards)
ModelNKX61_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length7
Quality
B
Motif rank
1
ConsensushAATGRv
Best auROC (human)0.547
Best auROC (mouse)0.846
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)8
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNK-6 {3.1.2.19}
HGNCHGNC:7839
EntrezGeneGeneID:4825
(SSTAR profile)
UniProt IDNKX61_HUMAN
UniProt ACP78426
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.56757
0.0005 6.831025
0.0001 7.089180000000001
GTEx tissue expression atlas NKX6-1 expression
ReMap ChIP-seq dataset list NKX6-1 datasets
Motifs in JASPAR
PCM
ACGT
01189.066.036.0209.0
02460.03.037.00.0
03497.01.02.00.0
040.00.03.0497.0
050.00.0500.00.0
06279.01.0218.02.0
07199.0138.0135.028.0
PWM
ACGT
010.409-0.628-1.2150.509
021.294-3.325-1.189-4.4
031.371-3.903-3.573-4.4
04-4.4-4.4-3.3251.371
05-4.4-4.41.377-4.4
060.796-3.9030.551-3.573
070.460.0980.076-1.454