We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx6-1
ModelNKX61_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusMhWdATKdvhWWWWRAWdd
Best auROC (human)0.379
Best auROC (mouse)0.953
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)8
Aligned words498
TF familyNK-related factors {3.1.2}
TF subfamilyNK-6 {3.1.2.19}
MGIMGI:1206039
EntrezGeneGeneID:18096
(SSTAR profile)
UniProt IDNKX61_MOUSE
UniProt ACQ99MA9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.88831
0.0005 6.698860000000001
0.0001 8.381310000000001
GTEx tissue expression atlas Nkx6-1 expression
Motifs in JASPAR
MA0674.1 (NKX6-1; Homo sapiens)
PCM
ACGT
01306.066.062.064.0
0291.0119.080.0208.0
03136.030.036.0296.0
04287.039.0105.067.0
05465.06.014.013.0
0627.012.060.0399.0
0729.038.0250.0181.0
08112.031.0216.0139.0
0980.0149.0200.069.0
10172.0132.060.0134.0
11206.026.034.0232.0
12147.026.035.0290.0
13113.025.020.0340.0
1451.042.021.0384.0
15300.066.0113.019.0
16476.09.05.08.0
1758.09.044.0387.0
1893.014.0183.0208.0
19215.044.0185.054.0
PWM
ACGT
010.892-0.624-0.685-0.654
02-0.309-0.045-0.4350.508
030.087-1.385-1.2110.859
040.828-1.134-0.168-0.609
051.309-2.815-2.092-2.159
06-1.485-2.23-0.7171.156
07-1.417-1.1590.6910.37
08-0.104-1.3540.5460.109
09-0.4350.1780.469-0.58
100.320.058-0.7170.073
110.499-1.521-1.2660.617
120.164-1.521-1.2380.839
13-0.096-1.558-1.7660.997
14-0.875-1.063-1.7211.118
150.872-0.624-0.096-1.814
161.332-2.48-2.957-2.58
17-0.75-2.48-1.0181.126
18-0.288-2.0920.3810.508
190.541-1.0180.392-0.819