We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNkx6-1
ModelNKX61_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
A
Motif rank
1
ConsensusdWhAATGRv
Best auROC (human)0.448
Best auROC (mouse)0.867
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)8
Aligned words500
TF familyNK-related factors {3.1.2}
TF subfamilyNK-6 {3.1.2.19}
MGIMGI:1206039
EntrezGeneGeneID:18096
(SSTAR profile)
UniProt IDNKX61_MOUSE
UniProt ACQ99MA9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.313935
0.0005 6.780115
0.0001 7.48715
GTEx tissue expression atlas Nkx6-1 expression
Motifs in JASPAR
PCM
ACGT
01219.088.094.099.0
02177.0100.04.0219.0
03180.082.045.0193.0
04485.00.013.02.0
05497.01.01.01.0
063.02.01.0494.0
070.05.0490.05.0
08277.049.0160.014.0
09187.0136.0107.070.0
PWM
ACGT
010.555-0.346-0.281-0.23
020.344-0.22-3.1260.555
030.361-0.415-1.00.43
041.347-4.4-2.163-3.573
051.371-3.903-3.903-3.903
06-3.325-3.573-3.9031.365
07-4.4-2.9611.357-2.961
080.789-0.9180.244-2.096
090.3990.083-0.153-0.57