Model info
| Transcription factor | Nkx6-1 | ||||||||
| Model | NKX61_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dWhAATGRv | ||||||||
| Best auROC (human) | 0.448 | ||||||||
| Best auROC (mouse) | 0.867 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-6 {3.1.2.19} | ||||||||
| MGI | MGI:1206039 | ||||||||
| EntrezGene | GeneID:18096 (SSTAR profile) | ||||||||
| UniProt ID | NKX61_MOUSE | ||||||||
| UniProt AC | Q99MA9 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nkx6-1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 219.0 | 88.0 | 94.0 | 99.0 |
| 02 | 177.0 | 100.0 | 4.0 | 219.0 |
| 03 | 180.0 | 82.0 | 45.0 | 193.0 |
| 04 | 485.0 | 0.0 | 13.0 | 2.0 |
| 05 | 497.0 | 1.0 | 1.0 | 1.0 |
| 06 | 3.0 | 2.0 | 1.0 | 494.0 |
| 07 | 0.0 | 5.0 | 490.0 | 5.0 |
| 08 | 277.0 | 49.0 | 160.0 | 14.0 |
| 09 | 187.0 | 136.0 | 107.0 | 70.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.555 | -0.346 | -0.281 | -0.23 |
| 02 | 0.344 | -0.22 | -3.126 | 0.555 |
| 03 | 0.361 | -0.415 | -1.0 | 0.43 |
| 04 | 1.347 | -4.4 | -2.163 | -3.573 |
| 05 | 1.371 | -3.903 | -3.903 | -3.903 |
| 06 | -3.325 | -3.573 | -3.903 | 1.365 |
| 07 | -4.4 | -2.961 | 1.357 | -2.961 |
| 08 | 0.789 | -0.918 | 0.244 | -2.096 |
| 09 | 0.399 | 0.083 | -0.153 | -0.57 |