We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNKX6-2
(GeneCards)
ModelNKX62_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusndWTAATKRbn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words8076
TF familyNK-related factors {3.1.2}
TF subfamilyNK-6 {3.1.2.19}
HGNCHGNC:19321
EntrezGeneGeneID:84504
(SSTAR profile)
UniProt IDNKX62_HUMAN
UniProt ACQ9C056
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.8134049999999995
0.0005 6.722339999999999
0.0001 8.029135
GTEx tissue expression atlas NKX6-2 expression
ReMap ChIP-seq dataset list NKX6-2 datasets
Motifs in JASPAR
MA0675.1 (NKX6-2; Homo sapiens)
PCM
ACGT
012466.8331765.4731600.9052227.939
022800.0911227.8811428.8212604.357
031508.376364.126447.9985740.649
04149.113188.475100.4427623.12
057665.2493.857239.172152.872
068059.2570.860.1720.86
0777.5210.17213.3177970.139
08889.815239.9642981.7023949.668
095055.679248.1522469.624287.693
10730.7183715.3662375.1831239.883
111563.512729.9692069.6321698.037
PWM
ACGT
010.202-0.132-0.230.1
020.329-0.495-0.3430.256
03-0.289-1.706-1.51.046
04-2.59-2.359-2.9781.33
051.335-5.8-2.123-2.565
061.385-6.475-6.726-6.475
07-3.23-6.726-4.8651.374
08-0.816-2.120.3910.672
090.919-2.0870.203-1.94
10-1.0130.6110.164-0.485
11-0.2540.3030.027-0.171