Model info
| Transcription factor | NKX6-2 (GeneCards) | ||||||||
| Model | NKX62_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ndWTAATKRbn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 8076 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-6 {3.1.2.19} | ||||||||
| HGNC | HGNC:19321 | ||||||||
| EntrezGene | GeneID:84504 (SSTAR profile) | ||||||||
| UniProt ID | NKX62_HUMAN | ||||||||
| UniProt AC | Q9C056 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NKX6-2 expression | ||||||||
| ReMap ChIP-seq dataset list | NKX6-2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2466.833 | 1765.473 | 1600.905 | 2227.939 |
| 02 | 2800.091 | 1227.881 | 1428.821 | 2604.357 |
| 03 | 1508.376 | 364.126 | 447.998 | 5740.649 |
| 04 | 149.113 | 188.475 | 100.442 | 7623.12 |
| 05 | 7665.249 | 3.857 | 239.172 | 152.872 |
| 06 | 8059.257 | 0.86 | 0.172 | 0.86 |
| 07 | 77.521 | 0.172 | 13.317 | 7970.139 |
| 08 | 889.815 | 239.964 | 2981.702 | 3949.668 |
| 09 | 5055.679 | 248.152 | 2469.624 | 287.693 |
| 10 | 730.718 | 3715.366 | 2375.183 | 1239.883 |
| 11 | 1563.51 | 2729.969 | 2069.632 | 1698.037 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.202 | -0.132 | -0.23 | 0.1 |
| 02 | 0.329 | -0.495 | -0.343 | 0.256 |
| 03 | -0.289 | -1.706 | -1.5 | 1.046 |
| 04 | -2.59 | -2.359 | -2.978 | 1.33 |
| 05 | 1.335 | -5.8 | -2.123 | -2.565 |
| 06 | 1.385 | -6.475 | -6.726 | -6.475 |
| 07 | -3.23 | -6.726 | -4.865 | 1.374 |
| 08 | -0.816 | -2.12 | 0.391 | 0.672 |
| 09 | 0.919 | -2.087 | 0.203 | -1.94 |
| 10 | -1.013 | 0.611 | 0.164 | -0.485 |
| 11 | -0.254 | 0.303 | 0.027 | -0.171 |