We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR1D1
(GeneCards)
ModelNR1D1_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusnvnvWbKRGGbCAvnndvn
Best auROC (human)0.59
Best auROC (mouse)0.907
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)53
Aligned words508
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRev-ErbA (NR1D) {2.1.2.3}
HGNCHGNC:7962
EntrezGeneGeneID:9572
(SSTAR profile)
UniProt IDNR1D1_HUMAN
UniProt ACP20393
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.77066
0.0005 11.44411
0.0001 14.821860000000001
GTEx tissue expression atlas NR1D1 expression
ReMap ChIP-seq dataset list NR1D1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0132.022.076.09.033.023.012.012.039.060.081.08.015.011.043.024.0
0244.013.045.017.028.052.018.018.070.012.086.044.013.08.018.014.0
03111.014.023.07.057.019.03.06.077.046.034.010.033.042.08.010.0
04181.07.023.067.072.03.014.032.017.05.036.010.011.01.08.013.0
0535.093.0107.046.07.01.04.04.015.043.014.09.010.060.036.016.0
069.04.017.037.026.018.021.0132.010.016.020.0115.03.05.030.037.0
0719.01.026.02.033.00.010.00.047.07.033.01.0108.02.0207.04.0
084.00.0193.010.01.00.09.00.09.03.0243.021.00.00.06.01.0
090.00.014.00.00.00.03.00.01.09.0431.010.00.00.030.02.0
100.00.00.01.02.03.00.04.026.091.0103.0258.01.02.01.08.0
113.025.00.01.04.089.00.03.018.080.05.01.07.0236.06.022.0
1229.01.02.00.0407.04.014.05.011.00.00.00.027.00.00.00.0
1360.0131.0243.040.01.02.00.02.01.08.06.01.00.02.03.00.0
1424.010.018.010.040.022.034.047.058.032.090.072.016.06.09.012.0
1534.021.055.028.024.029.08.09.054.034.035.028.036.07.079.019.0
1635.04.080.029.025.07.035.024.023.08.0104.042.06.06.042.030.0
1725.015.040.09.07.08.05.05.045.055.0131.030.017.027.061.020.0
1826.022.033.013.025.026.017.037.048.058.067.064.010.020.015.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.023-0.3460.881-1.2150.054-0.302-0.938-0.9380.2190.6460.945-1.328-0.721-1.0220.316-0.26
020.339-0.860.361-0.599-0.1080.504-0.543-0.5430.8-0.9381.0040.339-0.86-1.328-0.543-0.788
031.259-0.788-0.302-1.4540.595-0.49-2.234-1.60.8940.3830.083-1.1140.0540.293-1.328-1.114
041.746-1.454-0.3020.7560.828-2.234-0.7880.023-0.599-1.770.14-1.114-1.022-3.126-1.328-0.86
050.1121.0821.2220.383-1.454-3.126-1.975-1.975-0.7210.316-0.788-1.215-1.1140.6460.14-0.658
06-1.215-1.975-0.5990.167-0.181-0.543-0.3921.431-1.114-0.658-0.4391.294-2.234-1.77-0.040.167
07-0.49-3.126-0.181-2.5840.054-4.4-1.114-4.40.404-1.4540.054-3.1261.231-2.5841.88-1.975
08-1.975-4.41.81-1.114-3.126-4.4-1.215-4.4-1.215-2.2342.04-0.392-4.4-4.4-1.6-3.126
09-4.4-4.4-0.788-4.4-4.4-4.4-2.234-4.4-3.126-1.2152.613-1.114-4.4-4.4-0.04-2.584
10-4.4-4.4-4.4-3.126-2.584-2.234-4.4-1.975-0.1811.0611.1842.1-3.126-2.584-3.126-1.328
11-2.234-0.22-4.4-3.126-1.9751.039-4.4-2.234-0.5430.932-1.77-3.126-1.4542.011-1.6-0.346
12-0.074-3.126-2.584-4.42.555-1.975-0.788-1.77-1.022-4.4-4.4-4.4-0.144-4.4-4.4-4.4
130.6461.4242.040.244-3.126-2.584-4.4-2.584-3.126-1.328-1.6-3.126-4.4-2.584-2.234-4.4
14-0.26-1.114-0.543-1.1140.244-0.3460.0830.4040.6130.0231.050.828-0.658-1.6-1.215-0.938
150.083-0.3920.56-0.108-0.26-0.074-1.328-1.2150.5420.0830.112-0.1080.14-1.4540.92-0.49
160.112-1.9750.932-0.074-0.22-1.4540.112-0.26-0.302-1.3281.1940.293-1.6-1.60.293-0.04
17-0.22-0.7210.244-1.215-1.454-1.328-1.77-1.770.3610.561.424-0.04-0.599-0.1440.663-0.439
18-0.181-0.3460.054-0.86-0.22-0.181-0.5990.1670.4250.6130.7560.711-1.114-0.439-0.721-0.49