Model info
| Transcription factor | NR1D1 (GeneCards) | ||||||||
| Model | NR1D1_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRvnMWbWGKGdMAvdddv | ||||||||
| Best auROC (human) | 0.615 | ||||||||
| Best auROC (mouse) | 0.883 | ||||||||
| Peak sets in benchmark (human) | 1 | ||||||||
| Peak sets in benchmark (mouse) | 53 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Rev-ErbA (NR1D) {2.1.2.3} | ||||||||
| HGNC | HGNC:7962 | ||||||||
| EntrezGene | GeneID:9572 (SSTAR profile) | ||||||||
| UniProt ID | NR1D1_HUMAN | ||||||||
| UniProt AC | P20393 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR1D1 expression | ||||||||
| ReMap ChIP-seq dataset list | NR1D1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 211.0 | 40.0 | 161.0 | 88.0 |
| 02 | 154.0 | 28.0 | 268.0 | 50.0 |
| 03 | 125.0 | 105.0 | 246.0 | 24.0 |
| 04 | 135.0 | 107.0 | 161.0 | 97.0 |
| 05 | 237.0 | 225.0 | 23.0 | 15.0 |
| 06 | 369.0 | 3.0 | 28.0 | 100.0 |
| 07 | 40.0 | 183.0 | 214.0 | 63.0 |
| 08 | 53.0 | 12.0 | 41.0 | 394.0 |
| 09 | 98.0 | 1.0 | 386.0 | 15.0 |
| 10 | 33.0 | 6.0 | 365.0 | 96.0 |
| 11 | 10.0 | 25.0 | 445.0 | 20.0 |
| 12 | 73.0 | 71.0 | 98.0 | 258.0 |
| 13 | 62.0 | 335.0 | 58.0 | 45.0 |
| 14 | 439.0 | 20.0 | 11.0 | 30.0 |
| 15 | 105.0 | 97.0 | 233.0 | 65.0 |
| 16 | 180.0 | 59.0 | 156.0 | 105.0 |
| 17 | 184.0 | 65.0 | 176.0 | 75.0 |
| 18 | 134.0 | 43.0 | 209.0 | 114.0 |
| 19 | 117.0 | 88.0 | 216.0 | 79.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.519 | -1.114 | 0.25 | -0.346 |
| 02 | 0.206 | -1.454 | 0.756 | -0.898 |
| 03 | 0.0 | -0.172 | 0.671 | -1.6 |
| 04 | 0.076 | -0.153 | 0.25 | -0.25 |
| 05 | 0.634 | 0.582 | -1.64 | -2.034 |
| 06 | 1.074 | -3.325 | -1.454 | -0.22 |
| 07 | -1.114 | 0.377 | 0.533 | -0.673 |
| 08 | -0.841 | -2.234 | -1.09 | 1.14 |
| 09 | -0.24 | -3.903 | 1.119 | -2.034 |
| 10 | -1.298 | -2.819 | 1.063 | -0.26 |
| 11 | -2.394 | -1.561 | 1.261 | -1.77 |
| 12 | -0.529 | -0.556 | -0.24 | 0.718 |
| 13 | -0.689 | 0.978 | -0.754 | -1.0 |
| 14 | 1.247 | -1.77 | -2.311 | -1.389 |
| 15 | -0.172 | -0.25 | 0.617 | -0.643 |
| 16 | 0.361 | -0.737 | 0.219 | -0.172 |
| 17 | 0.383 | -0.643 | 0.339 | -0.503 |
| 18 | 0.069 | -1.044 | 0.509 | -0.091 |
| 19 | -0.065 | -0.346 | 0.542 | -0.452 |