We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR1D1
(GeneCards)
ModelNR1D1_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length14
Quality
D
Motif rank
1
ConsensusWWAAvTAGGTCAnd
Best auROC (human)0.419
Best auROC (mouse)0.759
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)53
Aligned words13
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRev-ErbA (NR1D) {2.1.2.3}
HGNCHGNC:7962
EntrezGeneGeneID:9572
(SSTAR profile)
UniProt IDNR1D1_HUMAN
UniProt ACP20393
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.298159999999999
0.0005 6.11669
0.0001 7.8404799999999994
GTEx tissue expression atlas NR1D1 expression
ReMap ChIP-seq dataset list NR1D1 datasets
Motifs in JASPAR
PCM
ACGT
017.5640.5082.3252.539
026.8430.01.0695.025
0310.9060.9620.01.069
0410.9060.00.02.031
054.0631.9255.8811.069
060.01.0691.06910.799
0710.9060.02.0310.0
080.00.011.8681.069
090.00.012.9370.0
100.00.00.012.937
110.012.0820.00.855
1212.9370.00.00.0
134.9181.0694.9182.031
145.5060.4812.5134.437
PWM
ACGT
010.75-1.216-0.267-0.198
020.658-1.801-0.8180.38
031.092-0.883-1.801-0.818
041.092-1.801-1.801-0.372
050.194-0.4130.521-0.818
06-1.801-0.818-0.8181.083
071.092-1.801-0.372-1.801
08-1.801-1.8011.172-0.818
09-1.801-1.8011.254-1.801
10-1.801-1.801-1.8011.254
11-1.8011.189-1.801-0.952
121.254-1.801-1.801-1.801
130.361-0.8180.361-0.372
140.461-1.24-0.2060.27