NR1D1_MOUSE.H11MO.1.C motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v12

Model info

Transcription factor

Model

NR1D1_MOUSE.H11MO.1.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

14

Quality

C

Motif rank

1

Consensus

WWAAvTAGGTCAnd

Best auROC (human)

0.419

Best auROC (mouse)

0.759

Peak sets in benchmark (human)

1

Peak sets in benchmark (mouse)

53

Aligned words

13

TF family

Thyroid hormone receptor-related factors (NR1) {2.1.2}

TF subfamily

Rev-ErbA (NR1D) {2.1.2.3}

MGI

EntrezGene

GeneID:217166
(SSTAR profile)

UniProt ID

UniProt AC

Q3UV55
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.29396
0.0005	6.114235000000001
0.0001	7.841895

GTEx tissue expression atlas

Nr1d1 expression

Motifs in JASPAR

PCM

	A	C	G	T
01	7.564	0.508	2.325	2.539
02	6.843	0.0	1.069	5.025
03	10.906	0.962	0.0	1.069
04	10.906	0.0	0.0	2.031
05	4.063	1.925	5.881	1.069
06	0.0	1.069	1.069	10.799
07	10.906	0.0	2.031	0.0
08	0.0	0.0	11.868	1.069
09	0.0	0.0	12.937	0.0
10	0.0	0.0	0.0	12.937
11	0.0	12.082	0.0	0.855
12	12.937	0.0	0.0	0.0
13	4.918	1.069	4.918	2.031
14	5.506	0.481	2.513	4.437

PWM

	A	C	G	T
01	0.75	-1.216	-0.267	-0.198
02	0.658	-1.801	-0.818	0.38
03	1.092	-0.883	-1.801	-0.818
04	1.092	-1.801	-1.801	-0.372
05	0.194	-0.413	0.521	-0.818
06	-1.801	-0.818	-0.818	1.083
07	1.092	-1.801	-0.372	-1.801
08	-1.801	-1.801	1.172	-0.818
09	-1.801	-1.801	1.254	-1.801
10	-1.801	-1.801	-1.801	1.254
11	-1.801	1.189	-1.801	-0.952
12	1.254	-1.801	-1.801	-1.801
13	0.361	-0.818	0.361	-0.372
14	0.461	-1.24	-0.206	0.27