Transcription factor | Nr1d1 | ||||||||
Model | NR1D1_MOUSE.H11MO.1.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 14 | ||||||||
Quality | C | ||||||||
Motif rank | 1 | ||||||||
Consensus | WWAAvTAGGTCAnd | ||||||||
Best auROC (human) | 0.419 | ||||||||
Best auROC (mouse) | 0.759 | ||||||||
Peak sets in benchmark (human) | 1 | ||||||||
Peak sets in benchmark (mouse) | 53 | ||||||||
Aligned words | 13 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | Rev-ErbA (NR1D) {2.1.2.3} | ||||||||
MGI | MGI:2444210 | ||||||||
EntrezGene | GeneID:217166 (SSTAR profile) | ||||||||
UniProt ID | NR1D1_MOUSE | ||||||||
UniProt AC | Q3UV55 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nr1d1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 7.564 | 0.508 | 2.325 | 2.539 |
02 | 6.843 | 0.0 | 1.069 | 5.025 |
03 | 10.906 | 0.962 | 0.0 | 1.069 |
04 | 10.906 | 0.0 | 0.0 | 2.031 |
05 | 4.063 | 1.925 | 5.881 | 1.069 |
06 | 0.0 | 1.069 | 1.069 | 10.799 |
07 | 10.906 | 0.0 | 2.031 | 0.0 |
08 | 0.0 | 0.0 | 11.868 | 1.069 |
09 | 0.0 | 0.0 | 12.937 | 0.0 |
10 | 0.0 | 0.0 | 0.0 | 12.937 |
11 | 0.0 | 12.082 | 0.0 | 0.855 |
12 | 12.937 | 0.0 | 0.0 | 0.0 |
13 | 4.918 | 1.069 | 4.918 | 2.031 |
14 | 5.506 | 0.481 | 2.513 | 4.437 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.75 | -1.216 | -0.267 | -0.198 |
02 | 0.658 | -1.801 | -0.818 | 0.38 |
03 | 1.092 | -0.883 | -1.801 | -0.818 |
04 | 1.092 | -1.801 | -1.801 | -0.372 |
05 | 0.194 | -0.413 | 0.521 | -0.818 |
06 | -1.801 | -0.818 | -0.818 | 1.083 |
07 | 1.092 | -1.801 | -0.372 | -1.801 |
08 | -1.801 | -1.801 | 1.172 | -0.818 |
09 | -1.801 | -1.801 | 1.254 | -1.801 |
10 | -1.801 | -1.801 | -1.801 | 1.254 |
11 | -1.801 | 1.189 | -1.801 | -0.952 |
12 | 1.254 | -1.801 | -1.801 | -1.801 |
13 | 0.361 | -0.818 | 0.361 | -0.372 |
14 | 0.461 | -1.24 | -0.206 | 0.27 |