We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr1d2
ModelNR1D2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnvvdvWvTRRGTCAbnvn
Best auROC (human)
Best auROC (mouse)0.898
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)12
Aligned words511
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyRev-ErbA (NR1D) {2.1.2.3}
MGIMGI:2449205
EntrezGeneGeneID:353187
(SSTAR profile)
UniProt IDNR1D2_MOUSE
UniProt ACQ60674
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.777260000000002
0.0005 11.54541
0.0001 15.22676
GTEx tissue expression atlas Nr1d2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0126.027.097.08.037.024.09.07.045.016.065.012.030.020.057.020.0
0233.010.082.013.033.027.014.013.055.023.0130.020.015.02.026.04.0
0342.07.069.018.022.014.01.025.055.07.0122.068.018.04.014.014.0
0489.021.023.04.016.05.04.07.0141.044.011.010.033.057.018.017.0
05185.04.012.078.073.09.07.038.018.013.08.017.08.02.08.020.0
0630.074.0157.023.04.09.012.03.010.015.07.03.016.045.074.018.0
070.02.06.052.03.04.05.0131.05.09.018.0218.02.04.017.024.0
087.00.02.01.08.00.010.01.027.00.019.00.0131.06.0284.04.0
0921.01.0146.05.03.00.03.00.0117.02.0154.042.01.00.04.01.0
104.013.0120.05.00.00.03.00.09.016.0280.02.01.04.042.01.0
114.01.03.06.02.01.01.029.04.013.030.0398.00.00.00.08.0
120.010.00.00.00.015.00.00.00.026.03.05.05.0412.011.013.0
134.00.00.01.0445.07.00.011.09.00.04.01.015.01.00.02.0
1460.0143.0186.084.03.02.00.03.00.02.02.00.02.02.09.02.0
1525.012.020.08.052.021.016.060.056.043.040.058.015.013.030.031.0
1626.023.083.016.034.026.016.013.026.022.036.022.029.016.087.025.0
1730.014.058.013.030.021.04.032.042.040.083.057.07.018.027.024.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.181-0.1441.124-1.3280.167-0.26-1.215-1.4540.361-0.6580.726-0.938-0.04-0.4390.595-0.439
020.054-1.1140.957-0.860.054-0.144-0.788-0.860.56-0.3021.416-0.439-0.721-2.584-0.181-1.975
030.293-1.4540.785-0.543-0.346-0.788-3.126-0.220.56-1.4541.3530.771-0.543-1.975-0.788-0.788
041.039-0.392-0.302-1.975-0.658-1.77-1.975-1.4541.4970.339-1.022-1.1140.0540.595-0.543-0.599
051.768-1.975-0.9380.9070.841-1.215-1.4540.193-0.543-0.86-1.328-0.599-1.328-2.584-1.328-0.439
06-0.040.8551.604-0.302-1.975-1.215-0.938-2.234-1.114-0.721-1.454-2.234-0.6580.3610.855-0.543
07-4.4-2.584-1.60.504-2.234-1.975-1.771.424-1.77-1.215-0.5431.932-2.584-1.975-0.599-0.26
08-1.454-4.4-2.584-3.126-1.328-4.4-1.114-3.126-0.144-4.4-0.49-4.41.424-1.62.196-1.975
09-0.392-3.1261.532-1.77-2.234-4.4-2.234-4.41.311-2.5841.5850.293-3.126-4.4-1.975-3.126
10-1.975-0.861.336-1.77-4.4-4.4-2.234-4.4-1.215-0.6582.182-2.584-3.126-1.9750.293-3.126
11-1.975-3.126-2.234-1.6-2.584-3.126-3.126-0.074-1.975-0.86-0.042.533-4.4-4.4-4.4-1.328
12-4.4-1.114-4.4-4.4-4.4-0.721-4.4-4.4-4.4-0.181-2.234-1.77-1.772.568-1.022-0.86
13-1.975-4.4-4.4-3.1262.645-1.454-4.4-1.022-1.215-4.4-1.975-3.126-0.721-3.126-4.4-2.584
140.6461.5111.7730.981-2.234-2.584-4.4-2.234-4.4-2.584-2.584-4.4-2.584-2.584-1.215-2.584
15-0.22-0.938-0.439-1.3280.504-0.392-0.6580.6460.5780.3160.2440.613-0.721-0.86-0.04-0.008
16-0.181-0.3020.969-0.6580.083-0.181-0.658-0.86-0.181-0.3460.14-0.346-0.074-0.6581.016-0.22
17-0.04-0.7880.613-0.86-0.04-0.392-1.9750.0230.2930.2440.9690.595-1.454-0.543-0.144-0.26