Model info
| Transcription factor | Nr1d2 | ||||||||
| Model | NR1D2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvRdMWvKRRGKCAvdvdd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.892 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 12 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Rev-ErbA (NR1D) {2.1.2.3} | ||||||||
| MGI | MGI:2449205 | ||||||||
| EntrezGene | GeneID:353187 (SSTAR profile) | ||||||||
| UniProt ID | NR1D2_MOUSE | ||||||||
| UniProt AC | Q60674 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr1d2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 165.0 | 68.0 | 183.0 | 84.0 |
| 02 | 187.0 | 74.0 | 194.0 | 45.0 |
| 03 | 179.0 | 36.0 | 253.0 | 32.0 |
| 04 | 167.0 | 25.0 | 197.0 | 111.0 |
| 05 | 293.0 | 101.0 | 79.0 | 27.0 |
| 06 | 272.0 | 18.0 | 71.0 | 139.0 |
| 07 | 69.0 | 121.0 | 261.0 | 49.0 |
| 08 | 41.0 | 10.0 | 75.0 | 374.0 |
| 09 | 192.0 | 11.0 | 287.0 | 10.0 |
| 10 | 200.0 | 1.0 | 281.0 | 18.0 |
| 11 | 13.0 | 29.0 | 452.0 | 6.0 |
| 12 | 9.0 | 32.0 | 80.0 | 379.0 |
| 13 | 16.0 | 444.0 | 33.0 | 7.0 |
| 14 | 476.0 | 3.0 | 3.0 | 18.0 |
| 15 | 70.0 | 145.0 | 218.0 | 67.0 |
| 16 | 193.0 | 60.0 | 107.0 | 140.0 |
| 17 | 135.0 | 69.0 | 239.0 | 57.0 |
| 18 | 136.0 | 53.0 | 228.0 | 83.0 |
| 19 | 143.0 | 79.0 | 192.0 | 86.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.275 | -0.599 | 0.377 | -0.392 |
| 02 | 0.399 | -0.516 | 0.435 | -1.0 |
| 03 | 0.355 | -1.215 | 0.699 | -1.328 |
| 04 | 0.287 | -1.561 | 0.45 | -0.117 |
| 05 | 0.845 | -0.21 | -0.452 | -1.489 |
| 06 | 0.771 | -1.868 | -0.556 | 0.105 |
| 07 | -0.584 | -0.032 | 0.73 | -0.918 |
| 08 | -1.09 | -2.394 | -0.503 | 1.088 |
| 09 | 0.425 | -2.311 | 0.824 | -2.394 |
| 10 | 0.465 | -3.903 | 0.803 | -1.868 |
| 11 | -2.163 | -1.421 | 1.276 | -2.819 |
| 12 | -2.484 | -1.328 | -0.439 | 1.101 |
| 13 | -1.975 | 1.259 | -1.298 | -2.694 |
| 14 | 1.328 | -3.325 | -3.325 | -1.868 |
| 15 | -0.57 | 0.147 | 0.551 | -0.613 |
| 16 | 0.43 | -0.721 | -0.153 | 0.112 |
| 17 | 0.076 | -0.584 | 0.642 | -0.771 |
| 18 | 0.083 | -0.841 | 0.595 | -0.403 |
| 19 | 0.133 | -0.452 | 0.425 | -0.368 |