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Model info
Transcription factorNR1H2
(GeneCards)
ModelNR1H2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length19
Quality
D
Motif rank
0
ConsensusTMRAGGTCAAAGGTCAASK
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words24
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
HGNCHGNC:7965
EntrezGeneGeneID:7376
(SSTAR profile)
UniProt IDNR1H2_HUMAN
UniProt ACP55055
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.66703
0.0005 2.9426750000000004
0.0001 5.71173
GTEx tissue expression atlas NR1H2 expression
ReMap ChIP-seq dataset list NR1H2 datasets
Motifs in JASPAR
MA0115.1 (NR1H2::RXRA; Homo sapiens)
PCM
ACGT
010.7810.7810.78116.408
0213.2833.9070.01.563
0313.2830.03.9071.563
0414.8450.03.9070.0
050.00.018.7520.0
060.00.017.9710.781
070.00.00.018.752
080.018.7520.00.0
0918.7520.00.00.0
1018.7520.00.00.0
1118.7520.00.00.0
120.00.018.7520.0
130.00.018.7520.0
140.00.00.018.752
150.018.7520.00.0
1618.7520.00.00.0
1715.6270.01.5631.563
180.011.724.6882.344
190.00.78111.726.251
PWM
ACGT
01-1.275-1.275-1.2751.151
020.95-0.156-2.001-0.859
030.95-2.001-0.156-0.859
041.056-2.001-0.156-2.001
05-2.001-2.0011.279-2.001
06-2.001-2.0011.238-1.275
07-2.001-2.001-2.0011.279
08-2.0011.279-2.001-2.001
091.279-2.001-2.001-2.001
101.279-2.001-2.001-2.001
111.279-2.001-2.001-2.001
12-2.001-2.0011.279-2.001
13-2.001-2.0011.279-2.001
14-2.001-2.001-2.0011.279
15-2.0011.279-2.001-2.001
161.279-2.001-2.001-2.001
171.105-2.001-0.859-0.859
18-2.0010.8320.0-0.566
19-2.001-1.2750.8320.253