We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR1H3
(GeneCards)
ModelNR1H3_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
A
Motif rank
0
ConsensusnvdKKbnWbbnnRGGdCAndbn
Best auROC (human)0.823
Best auROC (mouse)0.937
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words502
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
HGNCHGNC:7966
EntrezGeneGeneID:10062
(SSTAR profile)
UniProt IDNR1H3_HUMAN
UniProt ACQ13133
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.908560000000001
0.0005 11.58241
0.0001 15.04321
GTEx tissue expression atlas NR1H3 expression
ReMap ChIP-seq dataset list NR1H3 datasets
Motifs in JASPAR
MA0494.1 (Nr1h3::Rxra; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0161.025.057.016.066.031.027.020.029.024.037.011.018.010.056.012.0
0272.013.077.012.053.010.014.013.083.012.062.020.012.04.042.01.0
0320.016.0162.022.013.09.07.010.032.05.0117.041.05.07.029.05.0
048.07.039.016.05.08.04.020.011.021.0204.079.010.00.043.025.0
057.07.013.07.04.04.00.028.022.044.041.0183.012.031.026.071.0
069.022.09.05.021.027.06.032.024.027.016.013.038.0101.047.0103.0
0762.05.013.012.0124.08.01.044.044.00.013.021.0107.07.017.022.0
0836.0182.045.074.03.012.02.03.07.013.010.014.07.055.022.015.0
099.015.025.04.039.087.011.0125.012.046.011.010.05.027.021.053.0
1016.012.014.023.069.045.04.057.017.025.013.013.044.059.054.035.0
1152.026.047.021.057.047.08.029.024.021.021.019.026.033.044.025.0
12104.07.044.04.0105.07.07.08.090.03.024.03.045.06.032.011.0
1310.02.0319.013.04.00.017.02.08.01.097.01.00.00.025.01.0
141.01.019.01.01.00.01.01.010.05.0397.046.01.00.012.04.0
150.02.07.04.01.01.01.03.056.052.062.0259.05.06.07.034.0
164.054.03.01.00.055.01.05.02.067.01.07.04.0269.04.023.0
177.01.02.00.0426.03.010.06.06.01.02.00.033.00.03.00.0
1897.0118.0174.083.00.01.03.01.02.04.06.05.00.01.05.00.0
1954.06.026.013.060.017.09.038.076.031.057.024.019.020.027.023.0
2028.038.0113.030.016.020.07.031.023.015.058.023.014.010.056.018.0
2120.012.038.011.032.016.011.024.068.026.074.066.023.027.027.025.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.663-0.220.595-0.6580.741-0.008-0.144-0.439-0.074-0.260.167-1.022-0.543-1.1140.578-0.938
020.828-0.860.894-0.9380.523-1.114-0.788-0.860.969-0.9380.679-0.439-0.938-1.9750.293-3.126
03-0.439-0.6581.636-0.346-0.86-1.215-1.454-1.1140.023-1.771.3110.269-1.77-1.454-0.074-1.77
04-1.328-1.4540.219-0.658-1.77-1.328-1.975-0.439-1.022-0.3921.8660.92-1.114-4.40.316-0.22
05-1.454-1.454-0.86-1.454-1.975-1.975-4.4-0.108-0.3460.3390.2691.757-0.938-0.008-0.1810.814
06-1.215-0.346-1.215-1.77-0.392-0.144-1.60.023-0.26-0.144-0.658-0.860.1931.1650.4041.184
070.679-1.77-0.86-0.9381.369-1.328-3.1260.3390.339-4.4-0.86-0.3921.222-1.454-0.599-0.346
080.141.7520.3610.855-2.234-0.938-2.584-2.234-1.454-0.86-1.114-0.788-1.4540.56-0.346-0.721
09-1.215-0.721-0.22-1.9750.2191.016-1.0221.377-0.9380.383-1.022-1.114-1.77-0.144-0.3920.523
10-0.658-0.938-0.788-0.3020.7850.361-1.9750.595-0.599-0.22-0.86-0.860.3390.630.5420.112
110.504-0.1810.404-0.3920.5950.404-1.328-0.074-0.26-0.392-0.392-0.49-0.1810.0540.339-0.22
121.194-1.4540.339-1.9751.203-1.454-1.454-1.3281.05-2.234-0.26-2.2340.361-1.60.023-1.022
13-1.114-2.5842.312-0.86-1.975-4.4-0.599-2.584-1.328-3.1261.124-3.126-4.4-4.4-0.22-3.126
14-3.126-3.126-0.49-3.126-3.126-4.4-3.126-3.126-1.114-1.772.5310.383-3.126-4.4-0.938-1.975
15-4.4-2.584-1.454-1.975-3.126-3.126-3.126-2.2340.5780.5040.6792.104-1.77-1.6-1.4540.083
16-1.9750.542-2.234-3.126-4.40.56-3.126-1.77-2.5840.756-3.126-1.454-1.9752.142-1.975-0.302
17-1.454-3.126-2.584-4.42.601-2.234-1.114-1.6-1.6-3.126-2.584-4.40.054-4.4-2.234-4.4
181.1241.321.7070.969-4.4-3.126-2.234-3.126-2.584-1.975-1.6-1.77-4.4-3.126-1.77-4.4
190.542-1.6-0.181-0.860.646-0.599-1.2150.1930.881-0.0080.595-0.26-0.49-0.439-0.144-0.302
20-0.1080.1931.276-0.04-0.658-0.439-1.454-0.008-0.302-0.7210.613-0.302-0.788-1.1140.578-0.543
21-0.439-0.9380.193-1.0220.023-0.658-1.022-0.260.771-0.1810.8550.741-0.302-0.144-0.144-0.22