Check the newest release v13
Model info
Transcription factorNR1H3
(GeneCards)
ModelNR1H3_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
A
Motif rank
0
ConsensusnvdKKbnWbbnnRGGdCAndbn
Best auROC (human)0.823
Best auROC (mouse)0.937
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words502
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
HGNCHGNC:7966
EntrezGeneGeneID:10062
(SSTAR profile)
UniProt IDNR1H3_HUMAN
UniProt ACQ13133
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.908560000000001
0.0005 11.58241
0.0001 15.04321
GTEx tissue expression atlas NR1H3 expression
ReMap ChIP-seq dataset list NR1H3 datasets
Motifs in JASPAR
MA0494.1 (Nr1h3::Rxra; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0161.025.057.016.066.031.027.020.029.024.037.011.018.010.056.012.0
0272.013.077.012.053.010.014.013.083.012.062.020.012.04.042.01.0
0320.016.0162.022.013.09.07.010.032.05.0117.041.05.07.029.05.0
048.07.039.016.05.08.04.020.011.021.0204.079.010.00.043.025.0
057.07.013.07.04.04.00.028.022.044.041.0183.012.031.026.071.0
069.022.09.05.021.027.06.032.024.027.016.013.038.0101.047.0103.0
0762.05.013.012.0124.08.01.044.044.00.013.021.0107.07.017.022.0
0836.0182.045.074.03.012.02.03.07.013.010.014.07.055.022.015.0
099.015.025.04.039.087.011.0125.012.046.011.010.05.027.021.053.0
1016.012.014.023.069.045.04.057.017.025.013.013.044.059.054.035.0
1152.026.047.021.057.047.08.029.024.021.021.019.026.033.044.025.0
12104.07.044.04.0105.07.07.08.090.03.024.03.045.06.032.011.0
1310.02.0319.013.04.00.017.02.08.01.097.01.00.00.025.01.0
141.01.019.01.01.00.01.01.010.05.0397.046.01.00.012.04.0
150.02.07.04.01.01.01.03.056.052.062.0259.05.06.07.034.0
164.054.03.01.00.055.01.05.02.067.01.07.04.0269.04.023.0
177.01.02.00.0426.03.010.06.06.01.02.00.033.00.03.00.0
1897.0118.0174.083.00.01.03.01.02.04.06.05.00.01.05.00.0
1954.06.026.013.060.017.09.038.076.031.057.024.019.020.027.023.0
2028.038.0113.030.016.020.07.031.023.015.058.023.014.010.056.018.0
2120.012.038.011.032.016.011.024.068.026.074.066.023.027.027.025.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.663-0.220.595-0.6580.741-0.008-0.144-0.439-0.074-0.260.167-1.022-0.543-1.1140.578-0.938
020.828-0.860.894-0.9380.523-1.114-0.788-0.860.969-0.9380.679-0.439-0.938-1.9750.293-3.126
03-0.439-0.6581.636-0.346-0.86-1.215-1.454-1.1140.023-1.771.3110.269-1.77-1.454-0.074-1.77
04-1.328-1.4540.219-0.658-1.77-1.328-1.975-0.439-1.022-0.3921.8660.92-1.114-4.40.316-0.22
05-1.454-1.454-0.86-1.454-1.975-1.975-4.4-0.108-0.3460.3390.2691.757-0.938-0.008-0.1810.814
06-1.215-0.346-1.215-1.77-0.392-0.144-1.60.023-0.26-0.144-0.658-0.860.1931.1650.4041.184
070.679-1.77-0.86-0.9381.369-1.328-3.1260.3390.339-4.4-0.86-0.3921.222-1.454-0.599-0.346
080.141.7520.3610.855-2.234-0.938-2.584-2.234-1.454-0.86-1.114-0.788-1.4540.56-0.346-0.721
09-1.215-0.721-0.22-1.9750.2191.016-1.0221.377-0.9380.383-1.022-1.114-1.77-0.144-0.3920.523
10-0.658-0.938-0.788-0.3020.7850.361-1.9750.595-0.599-0.22-0.86-0.860.3390.630.5420.112
110.504-0.1810.404-0.3920.5950.404-1.328-0.074-0.26-0.392-0.392-0.49-0.1810.0540.339-0.22
121.194-1.4540.339-1.9751.203-1.454-1.454-1.3281.05-2.234-0.26-2.2340.361-1.60.023-1.022
13-1.114-2.5842.312-0.86-1.975-4.4-0.599-2.584-1.328-3.1261.124-3.126-4.4-4.4-0.22-3.126
14-3.126-3.126-0.49-3.126-3.126-4.4-3.126-3.126-1.114-1.772.5310.383-3.126-4.4-0.938-1.975
15-4.4-2.584-1.454-1.975-3.126-3.126-3.126-2.2340.5780.5040.6792.104-1.77-1.6-1.4540.083
16-1.9750.542-2.234-3.126-4.40.56-3.126-1.77-2.5840.756-3.126-1.454-1.9752.142-1.975-0.302
17-1.454-3.126-2.584-4.42.601-2.234-1.114-1.6-1.6-3.126-2.584-4.40.054-4.4-2.234-4.4
181.1241.321.7070.969-4.4-3.126-2.234-3.126-2.584-1.975-1.6-1.77-4.4-3.126-1.77-4.4
190.542-1.6-0.181-0.860.646-0.599-1.2150.1930.881-0.0080.595-0.26-0.49-0.439-0.144-0.302
20-0.1080.1931.276-0.04-0.658-0.439-1.454-0.008-0.302-0.7210.613-0.302-0.788-1.1140.578-0.543
21-0.439-0.9380.193-1.0220.023-0.658-1.022-0.260.771-0.1810.8550.741-0.302-0.144-0.144-0.22