We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR1H3
(GeneCards)
ModelNR1H3_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
1
ConsensushvAGGKCAvd
Best auROC (human)0.761
Best auROC (mouse)0.903
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words500
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
HGNCHGNC:7966
EntrezGeneGeneID:10062
(SSTAR profile)
UniProt IDNR1H3_HUMAN
UniProt ACQ13133
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.457255
0.0005 6.373295
0.0001 7.751605
GTEx tissue expression atlas NR1H3 expression
ReMap ChIP-seq dataset list NR1H3 datasets
Motifs in JASPAR
PCM
ACGT
01244.0139.050.067.0
02228.0133.0124.015.0
03439.03.048.010.0
046.00.0488.06.0
053.04.0442.051.0
0653.063.077.0307.0
073.0485.07.05.0
08491.04.04.01.0
09103.0162.0175.060.0
10205.074.0137.084.0
PWM
ACGT
010.6630.105-0.898-0.613
020.5950.061-0.008-2.034
031.247-3.325-0.938-2.394
04-2.819-4.41.353-2.819
05-3.325-3.1261.254-0.879
06-0.841-0.673-0.4770.891
07-3.3251.347-2.694-2.961
081.359-3.126-3.126-3.903
09-0.1910.2560.333-0.721
100.49-0.5160.091-0.392