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Model info
Transcription factorNr1h3
ModelNR1H3_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusnvdKbnRhhhvAGGdCAnnb
Best auROC (human)0.84
Best auROC (mouse)0.94
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
MGIMGI:1352462
EntrezGeneGeneID:22259
(SSTAR profile)
UniProt IDNR1H3_MOUSE
UniProt ACQ9Z0Y9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.28646
0.0005 12.07746
0.0001 15.602810000000002
GTEx tissue expression atlas Nr1h3 expression
Motifs in JASPAR
MA0494.1 (Nr1h3::Rxra; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0172.04.068.020.042.029.010.020.055.018.062.011.022.015.038.014.0
0238.010.0115.028.030.03.012.021.059.03.094.022.018.02.037.08.0
0328.013.093.011.08.03.03.04.022.016.0171.049.08.02.047.022.0
0417.08.017.024.06.09.04.015.029.047.070.0168.06.013.023.044.0
0522.013.019.04.018.025.06.028.029.018.043.024.042.066.063.080.0
0656.012.038.05.091.015.06.010.055.014.044.018.097.09.014.016.0
0743.0170.028.058.09.017.01.023.014.030.030.028.04.024.06.015.0
088.033.018.011.036.092.01.0112.06.042.07.010.07.068.013.036.0
0928.09.010.010.0147.042.02.044.020.05.07.07.055.029.039.046.0
1093.044.099.014.036.022.014.013.05.022.023.08.019.026.046.016.0
11131.05.016.01.0105.06.01.02.0158.08.013.03.028.05.015.03.0
124.00.0415.03.03.00.021.00.05.00.040.00.00.00.09.00.0
130.00.012.00.00.00.00.00.08.02.0383.092.00.00.03.00.0
142.02.03.01.00.00.01.01.065.040.063.0230.017.017.04.054.0
152.077.02.03.01.055.01.02.00.063.01.07.02.0260.02.022.0
163.02.00.00.0444.02.07.02.04.00.02.00.028.00.04.02.0
17123.0126.0154.076.00.01.01.02.02.03.02.06.01.01.02.00.0
1865.09.025.027.061.016.014.040.058.030.047.024.09.021.035.019.0
1928.043.095.027.021.020.017.018.025.015.057.024.012.011.058.029.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.828-1.9750.771-0.4390.293-0.074-1.114-0.4390.56-0.5430.679-1.022-0.346-0.7210.193-0.788
020.193-1.1141.294-0.108-0.04-2.234-0.938-0.3920.63-2.2341.093-0.346-0.543-2.5840.167-1.328
03-0.108-0.861.082-1.022-1.328-2.234-2.234-1.975-0.346-0.6581.690.445-1.328-2.5840.404-0.346
04-0.599-1.328-0.599-0.26-1.6-1.215-1.975-0.721-0.0740.4040.81.672-1.6-0.86-0.3020.339
05-0.346-0.86-0.49-1.975-0.543-0.22-1.6-0.108-0.074-0.5430.316-0.260.2930.7410.6950.932
060.578-0.9380.193-1.771.061-0.721-1.6-1.1140.56-0.7880.339-0.5431.124-1.215-0.788-0.658
070.3161.684-0.1080.613-1.215-0.599-3.126-0.302-0.788-0.04-0.04-0.108-1.975-0.26-1.6-0.721
08-1.3280.054-0.543-1.0220.141.072-3.1261.268-1.60.293-1.454-1.114-1.4540.771-0.860.14
09-0.108-1.215-1.114-1.1141.5390.293-2.5840.339-0.439-1.77-1.454-1.4540.56-0.0740.2190.383
101.0820.3391.145-0.7880.14-0.346-0.788-0.86-1.77-0.346-0.302-1.328-0.49-0.1810.383-0.658
111.424-1.77-0.658-3.1261.203-1.6-3.126-2.5841.611-1.328-0.86-2.234-0.108-1.77-0.721-2.234
12-1.975-4.42.575-2.234-2.234-4.4-0.392-4.4-1.77-4.40.244-4.4-4.4-4.4-1.215-4.4
13-4.4-4.4-0.938-4.4-4.4-4.4-4.4-4.4-1.328-2.5842.4951.072-4.4-4.4-2.234-4.4
14-2.584-2.584-2.234-3.126-4.4-4.4-3.126-3.1260.7260.2440.6951.985-0.599-0.599-1.9750.542
15-2.5840.894-2.584-2.234-3.1260.56-3.126-2.584-4.40.695-3.126-1.454-2.5842.108-2.584-0.346
16-2.234-2.584-4.4-4.42.642-2.584-1.454-2.584-1.975-4.4-2.584-4.4-0.108-4.4-1.975-2.584
171.3611.3851.5850.881-4.4-3.126-3.126-2.584-2.584-2.234-2.584-1.6-3.126-3.126-2.584-4.4
180.726-1.215-0.22-0.1440.663-0.658-0.7880.2440.613-0.040.404-0.26-1.215-0.3920.112-0.49
19-0.1080.3161.104-0.144-0.392-0.439-0.599-0.543-0.22-0.7210.595-0.26-0.938-1.0220.613-0.074