We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr1h3
ModelNR1H3_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length20
Quality
A
Motif rank
0
ConsensusnvdKbnRhhhvAGGdCAnnb
Best auROC (human)0.84
Best auROC (mouse)0.94
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)10
Aligned words501
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
MGIMGI:1352462
EntrezGeneGeneID:22259
(SSTAR profile)
UniProt IDNR1H3_MOUSE
UniProt ACQ9Z0Y9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.28646
0.0005 12.07746
0.0001 15.602810000000002
GTEx tissue expression atlas Nr1h3 expression
Motifs in JASPAR
MA0494.1 (Nr1h3::Rxra; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0172.04.068.020.042.029.010.020.055.018.062.011.022.015.038.014.0
0238.010.0115.028.030.03.012.021.059.03.094.022.018.02.037.08.0
0328.013.093.011.08.03.03.04.022.016.0171.049.08.02.047.022.0
0417.08.017.024.06.09.04.015.029.047.070.0168.06.013.023.044.0
0522.013.019.04.018.025.06.028.029.018.043.024.042.066.063.080.0
0656.012.038.05.091.015.06.010.055.014.044.018.097.09.014.016.0
0743.0170.028.058.09.017.01.023.014.030.030.028.04.024.06.015.0
088.033.018.011.036.092.01.0112.06.042.07.010.07.068.013.036.0
0928.09.010.010.0147.042.02.044.020.05.07.07.055.029.039.046.0
1093.044.099.014.036.022.014.013.05.022.023.08.019.026.046.016.0
11131.05.016.01.0105.06.01.02.0158.08.013.03.028.05.015.03.0
124.00.0415.03.03.00.021.00.05.00.040.00.00.00.09.00.0
130.00.012.00.00.00.00.00.08.02.0383.092.00.00.03.00.0
142.02.03.01.00.00.01.01.065.040.063.0230.017.017.04.054.0
152.077.02.03.01.055.01.02.00.063.01.07.02.0260.02.022.0
163.02.00.00.0444.02.07.02.04.00.02.00.028.00.04.02.0
17123.0126.0154.076.00.01.01.02.02.03.02.06.01.01.02.00.0
1865.09.025.027.061.016.014.040.058.030.047.024.09.021.035.019.0
1928.043.095.027.021.020.017.018.025.015.057.024.012.011.058.029.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.828-1.9750.771-0.4390.293-0.074-1.114-0.4390.56-0.5430.679-1.022-0.346-0.7210.193-0.788
020.193-1.1141.294-0.108-0.04-2.234-0.938-0.3920.63-2.2341.093-0.346-0.543-2.5840.167-1.328
03-0.108-0.861.082-1.022-1.328-2.234-2.234-1.975-0.346-0.6581.690.445-1.328-2.5840.404-0.346
04-0.599-1.328-0.599-0.26-1.6-1.215-1.975-0.721-0.0740.4040.81.672-1.6-0.86-0.3020.339
05-0.346-0.86-0.49-1.975-0.543-0.22-1.6-0.108-0.074-0.5430.316-0.260.2930.7410.6950.932
060.578-0.9380.193-1.771.061-0.721-1.6-1.1140.56-0.7880.339-0.5431.124-1.215-0.788-0.658
070.3161.684-0.1080.613-1.215-0.599-3.126-0.302-0.788-0.04-0.04-0.108-1.975-0.26-1.6-0.721
08-1.3280.054-0.543-1.0220.141.072-3.1261.268-1.60.293-1.454-1.114-1.4540.771-0.860.14
09-0.108-1.215-1.114-1.1141.5390.293-2.5840.339-0.439-1.77-1.454-1.4540.56-0.0740.2190.383
101.0820.3391.145-0.7880.14-0.346-0.788-0.86-1.77-0.346-0.302-1.328-0.49-0.1810.383-0.658
111.424-1.77-0.658-3.1261.203-1.6-3.126-2.5841.611-1.328-0.86-2.234-0.108-1.77-0.721-2.234
12-1.975-4.42.575-2.234-2.234-4.4-0.392-4.4-1.77-4.40.244-4.4-4.4-4.4-1.215-4.4
13-4.4-4.4-0.938-4.4-4.4-4.4-4.4-4.4-1.328-2.5842.4951.072-4.4-4.4-2.234-4.4
14-2.584-2.584-2.234-3.126-4.4-4.4-3.126-3.1260.7260.2440.6951.985-0.599-0.599-1.9750.542
15-2.5840.894-2.584-2.234-3.1260.56-3.126-2.584-4.40.695-3.126-1.454-2.5842.108-2.584-0.346
16-2.234-2.584-4.4-4.42.642-2.584-1.454-2.584-1.975-4.4-2.584-4.4-0.108-4.4-1.975-2.584
171.3611.3851.5850.881-4.4-3.126-3.126-2.584-2.584-2.234-2.584-1.6-3.126-3.126-2.584-4.4
180.726-1.215-0.22-0.1440.663-0.658-0.7880.2440.613-0.040.404-0.26-1.215-0.3920.112-0.49
19-0.1080.3161.104-0.144-0.392-0.439-0.599-0.543-0.22-0.7210.595-0.26-0.938-1.0220.613-0.074