Transcription factor | Nr1h3 | ||||||||
Model | NR1H3_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | vdRdnMMRAGKYCAb | ||||||||
Best auROC (human) | 0.606 | ||||||||
Best auROC (mouse) | 0.896 | ||||||||
Peak sets in benchmark (human) | 13 | ||||||||
Peak sets in benchmark (mouse) | 10 | ||||||||
Aligned words | 500 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | LXR (NR1H) {2.1.2.7} | ||||||||
MGI | MGI:1352462 | ||||||||
EntrezGene | GeneID:22259 (SSTAR profile) | ||||||||
UniProt ID | NR1H3_MOUSE | ||||||||
UniProt AC | Q9Z0Y9 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nr1h3 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 96.0 | 156.0 | 201.0 | 47.0 |
02 | 250.0 | 22.0 | 89.0 | 139.0 |
03 | 70.0 | 28.0 | 336.0 | 66.0 |
04 | 112.0 | 30.0 | 262.0 | 96.0 |
05 | 63.0 | 141.0 | 141.0 | 155.0 |
06 | 49.0 | 387.0 | 26.0 | 38.0 |
07 | 392.0 | 67.0 | 9.0 | 32.0 |
08 | 253.0 | 50.0 | 174.0 | 23.0 |
09 | 406.0 | 3.0 | 84.0 | 7.0 |
10 | 6.0 | 4.0 | 477.0 | 13.0 |
11 | 32.0 | 12.0 | 285.0 | 171.0 |
12 | 15.0 | 134.0 | 82.0 | 269.0 |
13 | 14.0 | 425.0 | 20.0 | 41.0 |
14 | 428.0 | 9.0 | 9.0 | 54.0 |
15 | 74.0 | 118.0 | 206.0 | 102.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.26 | 0.219 | 0.47 | -0.958 |
02 | 0.687 | -1.681 | -0.335 | 0.105 |
03 | -0.57 | -1.454 | 0.981 | -0.628 |
04 | -0.108 | -1.389 | 0.734 | -0.26 |
05 | -0.673 | 0.119 | 0.119 | 0.213 |
06 | -0.918 | 1.122 | -1.525 | -1.163 |
07 | 1.135 | -0.613 | -2.484 | -1.328 |
08 | 0.699 | -0.898 | 0.327 | -1.64 |
09 | 1.17 | -3.325 | -0.392 | -2.694 |
10 | -2.819 | -3.126 | 1.33 | -2.163 |
11 | -1.328 | -2.234 | 0.817 | 0.31 |
12 | -2.034 | 0.069 | -0.415 | 0.76 |
13 | -2.096 | 1.215 | -1.77 | -1.09 |
14 | 1.222 | -2.484 | -2.484 | -0.823 |
15 | -0.516 | -0.057 | 0.495 | -0.201 |