Model info
| Transcription factor | Nr1h3 | ||||||||
| Model | NR1H3_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdRdnMMRAGKYCAb | ||||||||
| Best auROC (human) | 0.606 | ||||||||
| Best auROC (mouse) | 0.896 | ||||||||
| Peak sets in benchmark (human) | 13 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | LXR (NR1H) {2.1.2.7} | ||||||||
| MGI | MGI:1352462 | ||||||||
| EntrezGene | GeneID:22259 (SSTAR profile) | ||||||||
| UniProt ID | NR1H3_MOUSE | ||||||||
| UniProt AC | Q9Z0Y9 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nr1h3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 96.0 | 156.0 | 201.0 | 47.0 |
| 02 | 250.0 | 22.0 | 89.0 | 139.0 |
| 03 | 70.0 | 28.0 | 336.0 | 66.0 |
| 04 | 112.0 | 30.0 | 262.0 | 96.0 |
| 05 | 63.0 | 141.0 | 141.0 | 155.0 |
| 06 | 49.0 | 387.0 | 26.0 | 38.0 |
| 07 | 392.0 | 67.0 | 9.0 | 32.0 |
| 08 | 253.0 | 50.0 | 174.0 | 23.0 |
| 09 | 406.0 | 3.0 | 84.0 | 7.0 |
| 10 | 6.0 | 4.0 | 477.0 | 13.0 |
| 11 | 32.0 | 12.0 | 285.0 | 171.0 |
| 12 | 15.0 | 134.0 | 82.0 | 269.0 |
| 13 | 14.0 | 425.0 | 20.0 | 41.0 |
| 14 | 428.0 | 9.0 | 9.0 | 54.0 |
| 15 | 74.0 | 118.0 | 206.0 | 102.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.26 | 0.219 | 0.47 | -0.958 |
| 02 | 0.687 | -1.681 | -0.335 | 0.105 |
| 03 | -0.57 | -1.454 | 0.981 | -0.628 |
| 04 | -0.108 | -1.389 | 0.734 | -0.26 |
| 05 | -0.673 | 0.119 | 0.119 | 0.213 |
| 06 | -0.918 | 1.122 | -1.525 | -1.163 |
| 07 | 1.135 | -0.613 | -2.484 | -1.328 |
| 08 | 0.699 | -0.898 | 0.327 | -1.64 |
| 09 | 1.17 | -3.325 | -0.392 | -2.694 |
| 10 | -2.819 | -3.126 | 1.33 | -2.163 |
| 11 | -1.328 | -2.234 | 0.817 | 0.31 |
| 12 | -2.034 | 0.069 | -0.415 | 0.76 |
| 13 | -2.096 | 1.215 | -1.77 | -1.09 |
| 14 | 1.222 | -2.484 | -2.484 | -0.823 |
| 15 | -0.516 | -0.057 | 0.495 | -0.201 |