We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr1h4
ModelNR1H4_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
A
Motif rank
0
ConsensusvRGKKSRvYGdCCbvbvKKbYv
Best auROC (human)
Best auROC (mouse)0.942
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)15
Aligned words472
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
MGIMGI:1352464
EntrezGeneGeneID:20186
(SSTAR profile)
UniProt IDNR1H4_MOUSE
UniProt ACQ60641
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.1597100000000005
0.0005 8.08626
0.0001 12.172160000000002
GTEx tissue expression atlas Nr1h4 expression
Motifs in JASPAR
MA1110.1 (NR1H4; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0153.02.068.07.046.02.036.05.086.03.099.07.013.04.041.00.0
0211.02.0176.09.04.00.07.00.031.06.0194.013.03.01.014.01.0
032.03.043.01.02.00.07.00.034.010.0290.057.00.01.020.02.0
043.01.026.08.00.00.02.012.021.039.084.0216.00.03.019.038.0
050.020.03.01.00.036.02.05.03.0104.08.016.02.0188.054.030.0
062.00.03.00.0283.08.049.08.052.08.05.02.021.013.017.01.0
07157.089.082.030.011.05.08.05.023.026.016.09.02.04.05.00.0
0814.045.027.0107.03.017.04.0100.08.025.010.068.00.07.01.036.0
091.03.021.00.020.01.072.01.09.03.029.01.021.07.0281.02.0
1018.05.026.02.010.00.01.03.0187.054.0106.056.02.01.01.00.0
1126.0182.06.03.06.044.03.07.06.0109.08.011.02.049.03.07.0
121.036.02.01.030.0328.01.025.01.017.01.01.04.023.01.00.0
130.020.012.04.019.0123.0126.0136.00.01.02.02.00.014.010.03.0
141.05.011.02.042.057.022.037.019.084.035.012.018.055.050.022.0
1511.013.051.05.046.048.057.050.017.035.047.019.09.014.039.011.0
1620.020.042.01.049.029.020.012.054.072.057.011.08.018.053.06.0
1710.04.0114.03.012.01.0109.017.022.05.0114.031.02.01.022.05.0
186.04.035.01.04.01.03.03.025.031.0272.031.04.03.041.08.0
195.011.019.04.015.07.09.08.033.093.095.0130.02.012.08.021.0
200.044.06.05.03.082.012.026.03.0103.012.013.02.0120.015.026.0
211.05.00.02.0226.028.060.035.012.011.014.08.021.012.030.07.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.58-2.5280.828-1.3980.44-2.5280.197-1.7141.061-2.1781.202-1.398-0.803-1.9190.326-4.352
02-0.965-2.5281.775-1.158-1.919-4.352-1.398-4.3520.049-1.5431.872-0.803-2.178-3.072-0.731-3.072
03-2.528-2.1780.373-3.072-2.528-4.352-1.398-4.3520.14-1.0572.2740.652-4.352-3.072-0.383-2.528
04-2.178-3.072-0.125-1.271-4.352-4.352-2.528-0.881-0.3350.2761.0381.98-4.352-2.178-0.4330.25
05-4.352-0.383-2.178-3.072-4.3520.197-2.528-1.714-2.1781.251-1.271-0.601-2.5281.8410.5990.017
06-2.528-4.352-2.178-4.3522.249-1.2710.502-1.2710.561-1.271-1.714-2.528-0.335-0.803-0.542-3.072
071.6611.0961.0140.017-0.965-1.714-1.271-1.714-0.245-0.125-0.601-1.158-2.528-1.919-1.714-4.352
08-0.7310.418-0.0871.279-2.178-0.542-1.9191.212-1.271-0.163-1.0570.828-4.352-1.398-3.0720.197
09-3.072-2.178-0.335-4.352-0.383-3.0720.885-3.072-1.158-2.178-0.017-3.072-0.335-1.3982.242-2.528
10-0.486-1.714-0.125-2.528-1.057-4.352-3.072-2.1781.8360.5991.270.635-2.528-3.072-3.072-4.352
11-0.1251.809-1.543-2.178-1.5430.396-2.178-1.398-1.5431.298-1.271-0.965-2.5280.502-2.178-1.398
12-3.0720.197-2.528-3.0720.0172.397-3.072-0.163-3.072-0.542-3.072-3.072-1.919-0.245-3.072-4.352
13-4.352-0.383-0.881-1.919-0.4331.4181.4421.518-4.352-3.072-2.528-2.528-4.352-0.731-1.057-2.178
14-3.072-1.714-0.965-2.5280.3490.652-0.2890.224-0.4331.0380.169-0.881-0.4860.6170.522-0.289
15-0.965-0.8030.542-1.7140.440.4820.6520.522-0.5420.1690.461-0.433-1.158-0.7310.276-0.965
16-0.383-0.3830.349-3.0720.502-0.017-0.383-0.8810.5990.8850.652-0.965-1.271-0.4860.58-1.543
17-1.057-1.9191.342-2.178-0.881-3.0721.298-0.542-0.289-1.7141.3420.049-2.528-3.072-0.289-1.714
18-1.543-1.9190.169-3.072-1.919-3.072-2.178-2.178-0.1630.0492.210.049-1.919-2.1780.326-1.271
19-1.714-0.965-0.433-1.919-0.664-1.398-1.158-1.2710.1111.1391.1611.473-2.528-0.881-1.271-0.335
20-4.3520.396-1.543-1.714-2.1781.014-0.881-0.125-2.1781.241-0.881-0.803-2.5281.393-0.664-0.125
21-3.072-1.714-4.352-2.5282.025-0.0510.7030.169-0.881-0.965-0.731-1.271-0.335-0.8810.017-1.398