We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNr1h4
ModelNR1H4_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusvRGKKSRvYGdCCbbbvGK
Best auROC (human)
Best auROC (mouse)0.926
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)15
Aligned words451
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
MGIMGI:1352464
EntrezGeneGeneID:20186
(SSTAR profile)
UniProt IDNR1H4_MOUSE
UniProt ACQ60641
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.59711
0.0005 4.52006
0.0001 6.46316
GTEx tissue expression atlas Nr1h4 expression
Motifs in JASPAR
MA1110.1 (NR1H4; Homo sapiens)
PCM
ACGT
01122.088.0198.043.0
02217.07.0222.05.0
0333.04.0386.028.0
0446.016.0334.055.0
0511.055.0150.0235.0
0613.0329.066.043.0
07341.027.080.03.0
08167.0107.0133.044.0
0929.081.047.0294.0
1030.015.0402.04.0
11218.043.0145.045.0
1232.0382.026.011.0
1336.0363.05.047.0
1435.0161.0126.0129.0
1577.0190.0106.078.0
1654.099.0214.084.0
17144.0131.0138.038.0
1832.03.0365.051.0
1933.029.0348.041.0
PWM
ACGT
010.078-0.2440.557-0.943
020.648-2.5950.671-2.863
03-1.197-3.0291.221-1.353
04-0.877-1.8751.077-0.704
05-2.211-0.7040.2820.727
06-2.0631.062-0.526-0.943
071.098-1.388-0.338-3.228
080.388-0.0520.163-0.92
09-1.32-0.325-0.8560.95
10-1.288-1.9341.262-3.029
110.653-0.9430.249-0.899
12-1.2261.211-1.423-2.211
13-1.1141.16-2.863-0.856
14-1.1410.3520.110.133
15-0.3750.516-0.061-0.363
16-0.722-0.1280.634-0.29
170.2420.1480.2-1.062
18-1.226-3.2281.165-0.777
19-1.197-1.321.118-0.988