Transcription factor | Nr1h4 | ||||||||
Model | NR1H4_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | vRGKKSRvYGdCCbbbvGK | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.926 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 15 | ||||||||
Aligned words | 451 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | LXR (NR1H) {2.1.2.7} | ||||||||
MGI | MGI:1352464 | ||||||||
EntrezGene | GeneID:20186 (SSTAR profile) | ||||||||
UniProt ID | NR1H4_MOUSE | ||||||||
UniProt AC | Q60641 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nr1h4 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 122.0 | 88.0 | 198.0 | 43.0 |
02 | 217.0 | 7.0 | 222.0 | 5.0 |
03 | 33.0 | 4.0 | 386.0 | 28.0 |
04 | 46.0 | 16.0 | 334.0 | 55.0 |
05 | 11.0 | 55.0 | 150.0 | 235.0 |
06 | 13.0 | 329.0 | 66.0 | 43.0 |
07 | 341.0 | 27.0 | 80.0 | 3.0 |
08 | 167.0 | 107.0 | 133.0 | 44.0 |
09 | 29.0 | 81.0 | 47.0 | 294.0 |
10 | 30.0 | 15.0 | 402.0 | 4.0 |
11 | 218.0 | 43.0 | 145.0 | 45.0 |
12 | 32.0 | 382.0 | 26.0 | 11.0 |
13 | 36.0 | 363.0 | 5.0 | 47.0 |
14 | 35.0 | 161.0 | 126.0 | 129.0 |
15 | 77.0 | 190.0 | 106.0 | 78.0 |
16 | 54.0 | 99.0 | 214.0 | 84.0 |
17 | 144.0 | 131.0 | 138.0 | 38.0 |
18 | 32.0 | 3.0 | 365.0 | 51.0 |
19 | 33.0 | 29.0 | 348.0 | 41.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.078 | -0.244 | 0.557 | -0.943 |
02 | 0.648 | -2.595 | 0.671 | -2.863 |
03 | -1.197 | -3.029 | 1.221 | -1.353 |
04 | -0.877 | -1.875 | 1.077 | -0.704 |
05 | -2.211 | -0.704 | 0.282 | 0.727 |
06 | -2.063 | 1.062 | -0.526 | -0.943 |
07 | 1.098 | -1.388 | -0.338 | -3.228 |
08 | 0.388 | -0.052 | 0.163 | -0.92 |
09 | -1.32 | -0.325 | -0.856 | 0.95 |
10 | -1.288 | -1.934 | 1.262 | -3.029 |
11 | 0.653 | -0.943 | 0.249 | -0.899 |
12 | -1.226 | 1.211 | -1.423 | -2.211 |
13 | -1.114 | 1.16 | -2.863 | -0.856 |
14 | -1.141 | 0.352 | 0.11 | 0.133 |
15 | -0.375 | 0.516 | -0.061 | -0.363 |
16 | -0.722 | -0.128 | 0.634 | -0.29 |
17 | 0.242 | 0.148 | 0.2 | -1.062 |
18 | -1.226 | -3.228 | 1.165 | -0.777 |
19 | -1.197 | -1.32 | 1.118 | -0.988 |